View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3403_high_19 (Length: 236)

Name: NF3403_high_19
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3403_high_19
NF3403_high_19
[»] chr8 (6 HSPs)
chr8 (15-236)||(36200412-36200633)
chr8 (15-147)||(36209626-36209759)
chr8 (21-133)||(36196508-36196620)
chr8 (29-131)||(36188199-36188301)
chr8 (177-235)||(36212931-36212989)
chr8 (25-79)||(36184251-36184305)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 36200412 - 36200633
Alignment:
Q  15 aacaacgacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctccctctcttttctgaaccacatag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36200412 aacaacgacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctctctctcttttctgaaccacatag 36200511  T
Q  115 gaaagtaatgcaagaaacaagag-aatcttaccacgaccaaggtgtatgcagtgtaactaatgaagtacagataaagtttcattggatctgatactcaag 213  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  36200512 gaaaataatgcaagaaacaagagaaatcttaccacgaccaaggtgtatgcagtgtaactaatgaa-tacaaataaagtttcattggatctgatactcaag 36200610  T
Q  214 aagtgagaaagcttcatttgacc 236  Q
    |||||||||||||||||||||||    
T  36200611 aagtgagaaagcttcatttgacc 36200633  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 36209626 - 36209759
Alignment:
Q  15 aacaacgacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctccctctcttttctgaaccacatag 114  Q
    ||||| |||||||||||||||| |||||||||||||  ||||||||| || || | | ||||||| |||||||| |||||| ||||   |||||||| ||    
T  36209626 aacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttccctccctttaaagaaccacagag 36209725  T
Q  115 gaaagtaatgcaagaaacaagag-aatcttacca 147  Q
    |||| || ||||||||||||| | ||||||||||    
T  36209726 gaaattactgcaagaaacaagggaaatcttacca 36209759  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 36196508 - 36196620
Alignment:
Q  21 gacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctccctctcttttctgaaccacataggaaagt 120  Q
    |||||||||||||||  |||||| ||||||  ||||||||| ||||| ||||||| ||||||||||||||||||| ||||   |||||||| | |||| |    
T  36196508 gacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaattcctccctccctttaaagaaccacagacgaaatt 36196607  T
Q  121 aatgcaagaaaca 133  Q
    | |||||||||||    
T  36196608 actgcaagaaaca 36196620  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 36188199 - 36188301
Alignment:
Q  29 aacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctccctctcttttctgaaccacataggaaagtaatgcaag 128  Q
    |||||||| |||||||||||||| ||||||||| ||||| | | ||||||| ||||||||| ||||| ||||   || ||||| |||||| || ||||||    
T  36188199 aacagaacaaaccataccaaacctagttcaaaccattttattagagaggaaggtgaattcccccctccctttaaagagccacagaggaaattactgcaag 36188298  T
Q  129 aaa 131  Q
    |||    
T  36188299 aaa 36188301  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 36212931 - 36212989
Alignment:
Q  177 aagtacagataaagtttcattggatctgatactcaagaagtgagaaagcttcatttgac 235  Q
    |||| |||||||| ||||||| |||||||||| | ||||||||||||||||||||||||    
T  36212931 aagttcagataaaatttcattagatctgatacccgagaagtgagaaagcttcatttgac 36212989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 36184251 - 36184305
Alignment:
Q  25 tgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaa 79  Q
    |||||||||||| |||||||||||||  ||||||||| ||||| || ||||||||    
T  36184251 tgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaa 36184305  T

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