View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3403_high_2 (Length: 649)

Name: NF3403_high_2
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3403_high_2
NF3403_high_2
[»] chr4 (6 HSPs)
chr4 (1-260)||(44110193-44110466)
chr4 (365-513)||(44109932-44110082)
chr4 (426-513)||(49233245-49233333)
chr4 (472-513)||(6447103-6447144)
chr4 (467-513)||(33189141-33189189)
chr4 (467-513)||(50381950-50381998)
[»] chr5 (6 HSPs)
chr5 (387-513)||(6377491-6377619)
chr5 (6-135)||(6378836-6378963)
chr5 (206-261)||(6377784-6377839)
chr5 (467-513)||(35468017-35468065)
chr5 (477-513)||(35468247-35468283)
chr5 (477-513)||(38761313-38761349)
[»] chr3 (2 HSPs)
chr3 (426-513)||(43747787-43747875)
chr3 (477-513)||(40686998-40687034)
[»] chr7 (2 HSPs)
chr7 (467-513)||(2430624-2430672)
chr7 (477-513)||(43637382-43637418)
[»] chr6 (1 HSPs)
chr6 (467-513)||(32818612-32818660)
[»] chr1 (2 HSPs)
chr1 (467-513)||(25659004-25659052)
chr1 (430-511)||(45708022-45708105)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 44110466 - 44110193
Alignment:
Q  1 gagagagacaaaattttggtggggcccacgcttttgtggttctcctcagaatttgcgaagaaagaagagagaaagcatcaacatttctatttttcctatt 100  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44110466 gagacagacaaaattttggtggggcccacacttttgtggttctcctcaga-tttgcgaagaaagaagagagaaagcatcaacatttctatttttcctatt 44110368  T
Q  101 ctgcccttatctcatagtgccatcacgttgagaaagcaatatcccatgt--------------atcgagtgagtgctgaaactaa-nnnnnnnnaaagaa 185  Q
      |||||||||||| ||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||         ||||||    
T  44110367 tggcccttatctcacagtgccatcacgttgagaaagcaatatcccatgtataatattattgtgatcgagtgagtgctgaaactaatttttttttaaagaa 44110268  T
Q  186 ctaaagcttatttatatattttagtatgttagttttaaatgagttgacgtggaaatattacaaacttagttcaat 260  Q
    || |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44110267 ctgaagcttatttatatcttttagtatgttagttttgaatgagttgacgtggaaatattacaaacttagttcaat 44110193  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 365 - 513
Target Start/End: Complemental strand, 44110082 - 44109932
Alignment:
Q  365 cattgattttcctttnnnnnnngaattaattaatttaattttgatagaatatgttttttattcaagggtatttttgtacttttaaaagtaatcaatactt 464  Q
    |||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  44110082 cattgattttcctttaaaaaaagaattaattaatttaattttgctagaatatgttttttattcaagggtatttttgtactttcaaaaataatcaatactt 44109983  T
Q  465 gcttctcttctatct--ctcttctttatcttataccaaacaacacatcaaa 513  Q
      |||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  44109982 ctttctcttctatctctctcttctttatcttatatcaaacaacacatcaaa 44109932  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 513
Target Start/End: Original strand, 49233245 - 49233333
Alignment:
Q  426 tcaagggtatttttgtacttttaaaagtaatcaatacttgcttctcttctat--ctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||| |||||||||  |||||||| |||| || | ||| |||||||||||  |||||||||||||||||||||||| || ||||||||    
T  49233245 tcaaggatatttttgtctttttaaaaataat-aacatttgtttctcttctatttctctcttctttatcttataccaaagaatacatcaaa 49233333  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 513
Target Start/End: Complemental strand, 6447144 - 6447103
Alignment:
Q  472 ttctatctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  6447144 ttctttctctcttctttctcttataccaaacaatacatcaaa 6447103  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 513
Target Start/End: Original strand, 33189141 - 33189189
Alignment:
Q  467 ttctcttctat--ctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||||||||  |||||||||||||||||| ||||||||| |||||||    
T  33189141 ttctcttctatttctctcttctttatcttattccaaacaactcatcaaa 33189189  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 513
Target Start/End: Complemental strand, 50381998 - 50381950
Alignment:
Q  467 ttctcttctat--ctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||||||||  ||||||||||| |||||||||||||||| |||||||    
T  50381998 ttctcttctatttctctcttctttctcttataccaaacaacccatcaaa 50381950  T

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Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 387 - 513
Target Start/End: Complemental strand, 6377619 - 6377491
Alignment:
Q  387 gaattaattaatttaattttgatagaatatgttttttattcaagggtatttttgtacttttaaaagtaatcaatacttgcttctcttcta--tctctctt 484  Q
    |||| |||||||||| ||||| || ||||||||||| || |||||||||||||||||||  |||| ||||||| ||||  ||||||||||  | ||||||    
T  6377619 gaatcaattaatttagttttgctataatatgtttttaatacaagggtatttttgtacttccaaaaataatcaacacttctttctcttctatttttctctt 6377520  T
Q  485 ctttatcttataccaaacaacacatcaaa 513  Q
     ||| ||||||||||||||||||||||||    
T  6377519 ttttctcttataccaaacaacacatcaaa 6377491  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 6378963 - 6378836
Alignment:
Q  6 agacaaaattttggtggggcccacgcttttgtggttctcctcagaatttgcgaagaaagaagagagaaagcatcaacatttctatttttcctattctgcc 105  Q
    ||||| ||||||| |||||||||| ||||||| ||||||| || | |||||||||||||||||||||||||||||  |||||| ||||||||||||| ||    
T  6378963 agacagaattttgatggggcccacacttttgtagttctccccata-tttgcgaagaaagaagagagaaagcatcataatttctttttttcctattctacc 6378865  T
Q  106 cttatctcatagtgccatcacgttgagaaa 135  Q
    ||| ||||| | | |||||| |||||||||    
T  6378864 cttctctcaca-tcccatcatgttgagaaa 6378836  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 6377839 - 6377784
Alignment:
Q  206 ttagtatgttagttttaaatgagttgacgtggaaatattacaaacttagttcaata 261  Q
    |||||||||| ||||| |||||||||||||| ||||||||| | ||||||| ||||    
T  6377839 ttagtatgttggttttgaatgagttgacgtgaaaatattactaccttagtttaata 6377784  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 513
Target Start/End: Original strand, 35468017 - 35468065
Alignment:
Q  467 ttctcttctat--ctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||||||||  ||||||||||| ||||||||||||||| ||||||||    
T  35468017 ttctcttctatttctctcttctttctcttataccaaacaatacatcaaa 35468065  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 513
Target Start/End: Complemental strand, 35468283 - 35468247
Alignment:
Q  477 tctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||||||||| |||||||||||||||| |||||||    
T  35468283 tctctcttctttctcttataccaaacaacccatcaaa 35468247  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 513
Target Start/End: Original strand, 38761313 - 38761349
Alignment:
Q  477 tctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||||||||| |||||||||||||||| |||||||    
T  38761313 tctctcttctttctcttataccaaacaacccatcaaa 38761349  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 513
Target Start/End: Complemental strand, 43747875 - 43747787
Alignment:
Q  426 tcaagggtatttttgtacttttaaaagtaatcaatacttgcttctcttctat--ctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||| |||||||||  |||||||| |||| || | ||  |||||||||||  ||||||||||| ||||||||||||||| ||||||||    
T  43747875 tcaaggatatttttgtttttttaaaaataat-aacatttctttctcttctatttctctcttctttctcttataccaaacaatacatcaaa 43747787  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 513
Target Start/End: Original strand, 40686998 - 40687034
Alignment:
Q  477 tctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  40686998 tctctcttctttctcttataccaaacaatacatcaaa 40687034  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 513
Target Start/End: Complemental strand, 2430672 - 2430624
Alignment:
Q  467 ttctcttctat--ctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||||||||  ||||||||||| ||||||||||||||| ||||||||    
T  2430672 ttctcttctatttctctcttctttctcttataccaaacaatacatcaaa 2430624  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 513
Target Start/End: Complemental strand, 43637418 - 43637382
Alignment:
Q  477 tctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||||||||| |||||||||||||||| |||||||    
T  43637418 tctctcttctttctcttataccaaacaacccatcaaa 43637382  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 513
Target Start/End: Original strand, 32818612 - 32818660
Alignment:
Q  467 ttctcttctat--ctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||||||||  ||||||||||| |||||||||||||||| |||||||    
T  32818612 ttctcttctatttctctcttctttctcttataccaaacaacccatcaaa 32818660  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 513
Target Start/End: Complemental strand, 25659052 - 25659004
Alignment:
Q  467 ttctcttctat--ctctcttctttatcttataccaaacaacacatcaaa 513  Q
    |||||||||||  ||||||||||| ||||||||||||||| ||||||||    
T  25659052 ttctcttctatttctctcttctttctcttataccaaacaatacatcaaa 25659004  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 511
Target Start/End: Complemental strand, 45708105 - 45708022
Alignment:
Q  430 gggtatttttgtacttttaaaagtaatcaatacttgcttctcttctatctctct--tctttatcttataccaaacaacacatca 511  Q
    |||||| || ||||||||| || ||||||| ||||   |||||||||| |||||  ||| | ||||||||||||||||||||||    
T  45708105 gggtatcttagtacttttataaataatcaacacttctctctcttctatttctctcatctctctcttataccaaacaacacatca 45708022  T

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