View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_high_4 (Length: 506)
Name: NF3403_high_4
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 14 - 489
Target Start/End: Original strand, 52699304 - 52699779
Alignment:
| Q |
14 |
cagagaaggtcaaagttacaaaggtttgtagagtaaggaactaaaattgaataaaacagtatctagggaacgaagtcaaaccttaatataaccagaagtg |
113 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699304 |
cagagaaggtcaaagttacaaagttttgtagagtaaggaactaaaattgaataaaacagtatctagggaacgaagtcaaaccttaatataaccagaagtg |
52699403 |
T |
|
| Q |
114 |
taatttagtcttagttttatttgggtctataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagtta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699404 |
taatttagtcttagttttatttgggtctataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagtta |
52699503 |
T |
|
| Q |
214 |
gtaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctc |
313 |
Q |
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| T |
52699504 |
gcaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctc |
52699603 |
T |
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| Q |
314 |
tttggctcaaatgtcaacctggtttctaagtcaagccaaaatcatgaacaaaatgctaggtaaattcgaaatcccaaatggatctgttaccgtgtttgct |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699604 |
tttggctcaaatgtcaacctggtttctaagtcaagccaaaatcatgaacaaaaagctaggtaaattcgaaatcccaaatggatctgttaccgtgtttgct |
52699703 |
T |
|
| Q |
414 |
gccagcagcagtctcatacttatacccttatatgagagatttataatcccaattctccgaaaatttaccggccaca |
489 |
Q |
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| T |
52699704 |
gccagcagcagtctcatacttatacccttatatgagagatttataatcccaattctccgaaaatttaccggccaca |
52699779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 142 - 487
Target Start/End: Original strand, 52722728 - 52723076
Alignment:
| Q |
142 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagtaacagatggagtgtatgcacagtgac |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52722728 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
52722827 |
T |
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| Q |
242 |
acaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctctttggctcaaatgtcaacctggtttcta |
341 |
Q |
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| T |
52722828 |
acaagtcgaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttctt |
52722927 |
T |
|
| Q |
342 |
agtcaagccaaaatcatgaacaaaatgctagg---taaattcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatac |
438 |
Q |
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| T |
52722928 |
agtcaagccagcatcatgaatagaaaactaggaaacaagttcgaaatcccaacaggttctgtccctgtctttgctgccatcaacggcctcatacttgtac |
52723027 |
T |
|
| Q |
439 |
ccttatatgagagatttataatcccaattctccgaaaatttaccggcca |
487 |
Q |
| |
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| | || |||||||| ||||||||| ||||||| |||||||| ||||| |
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| T |
52723028 |
ctctctacgagagattaataatcccatttctccgcaaatttacaggcca |
52723076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 142 - 488
Target Start/End: Original strand, 52713706 - 52714055
Alignment:
| Q |
142 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagtaacagatggagtgtatgcacagtgac |
241 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||||||||||| |
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| T |
52713706 |
ataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagcaacagatggagtgtatgcacagtgac |
52713805 |
T |
|
| Q |
242 |
acaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctctttggctcaaatgtcaacctggtttcta |
341 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||| || |
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| T |
52713806 |
acaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttcttttta |
52713905 |
T |
|
| Q |
342 |
agtcaagccaaaatcatgaacaaaatgctagg---taaattcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatac |
438 |
Q |
| |
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|||||||||| |||||||| | || ||||| || ||||||||||| | || ||||| |||| |||| ||||| || | | ||||||||| ||| |
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| T |
52713906 |
agtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtac |
52714005 |
T |
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| Q |
439 |
ccttatatgagagatttataatcccaattctccgaaaatttaccggccac |
488 |
Q |
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| || || |||||||| ||||||||| ||||||| || |||||||||||| |
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| T |
52714006 |
ctttctacgagagattcataatcccatttctccgtaagtttaccggccac |
52714055 |
T |
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