View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_high_5 (Length: 436)
Name: NF3403_high_5
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 485884 - 485450
Alignment:
| Q |
1 |
gtcatttaaaaaattagtgaatatattgagatcttgtatgtagatggaaaaataagggctggggacaaagtttttccattcttttaaaactcagaacaag |
100 |
Q |
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| T |
485884 |
gtcatttaaaaaattagtgaatatattgagatcttgtatgtagatggaaaaataagggctagggacaaagtttttccattcttttaaaattcagaacaag |
485785 |
T |
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| Q |
101 |
aactttgactttcaaaagttagaattcaggatttgatgttggctatttgaattgaattcaggccatgttagttttaagcgtgaacataggtctcaacaaa |
200 |
Q |
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| T |
485784 |
aactttgactttcaaaagttagaattcaggatttgatgttggctatttgaattgaattcaggtcatgttagttttaagcgtaaacataggtctcaacaaa |
485685 |
T |
|
| Q |
201 |
atcaaaactttcttgtttggtgattttattttggccagtttcatgcttcaatgaaagtcattcaagaatagtacacagcttacttcataatgcgac---- |
296 |
Q |
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| T |
485684 |
atcaaaactttcttgtttggtgattttattttggccagtttcatgcttcaatgaaagtcattcaagaatagtacacagcttacttcataatgcgactaat |
485585 |
T |
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| Q |
297 |
taagtatatattagtatattaat----------gatgatgttnnnnnnnntactaaattaagacttcacaaaactggtaaagtggtatatattaattctt |
386 |
Q |
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| T |
485584 |
taagtatatattagtatattaatgatgatcatagatgatgttaaaaaaaatactaaattaagacttcacaaaactggtaaagtggtatatattaattctt |
485485 |
T |
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| Q |
387 |
tagtatataattgcatttgcatgttacaatattct |
421 |
Q |
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| T |
485484 |
tagtatataattgcatttgcatgttacaatattct |
485450 |
T |
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