View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_high_8 (Length: 394)
Name: NF3403_high_8
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 6996408 - 6996012
Alignment:
| Q |
1 |
taaattcttacaaaatttctaattacctcatccaaacatagatcaagttaacaagaataagctcatgcttatcaattttcccattttagtgcaaacatct |
100 |
Q |
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| T |
6996408 |
taaattcttacaaaatttctaattacctcatccaaacatagatcaagttaacaagaataagctcatgcttatcaattttcccatttgagtgcaaacatct |
6996309 |
T |
|
| Q |
101 |
aaaataatgaccaaatctttaagaccatatggttttaaagatcttagttgcaaggtaattgtgttcctcaagtacttgaattaaggtaaagtgttagtta |
200 |
Q |
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| T |
6996308 |
aaaataatgacgaaatctttaagaccatatggttttaaagatcttagttgcaaggtaattgtgttcctcaagtacttgaattaaggtaaagtgttagtta |
6996209 |
T |
|
| Q |
201 |
agttagcttgtaattcaagtaatgtgttg---------taactaactaattaatccgttagtttgttagtagttaaattagttagtatgattgtgtgtat |
291 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6996208 |
agttagcttgtaattcaagtaatgtgttgtaaccgttgtaactaactaattaatccgttagtttgttagtagttaaattagttagtatgattgtgtgtat |
6996109 |
T |
|
| Q |
292 |
tagattcaacactgcaccaaattgaaactgctctagaataattgtaccgtaccacatgtagagccaatggccgttaatgttattttgtctctgctcc |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6996108 |
tagattcaacactgcaccaaattgaaactgctctagaataattgtaccgtaccacatgtagagccaatggccgttaatgttattttgtctttgctcc |
6996012 |
T |
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