View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3403_high_9 (Length: 375)

Name: NF3403_high_9
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3403_high_9
NF3403_high_9
[»] chr3 (4 HSPs)
chr3 (21-366)||(49973913-49974258)
chr3 (71-225)||(23224588-23224742)
chr3 (46-188)||(39558421-39558563)
chr3 (46-276)||(49857730-49857960)
[»] scaffold0543 (2 HSPs)
scaffold0543 (46-260)||(4030-4245)
scaffold0543 (27-195)||(3817-3984)
[»] scaffold0492 (2 HSPs)
scaffold0492 (46-260)||(5576-5791)
scaffold0492 (27-195)||(5363-5530)
[»] chr7 (2 HSPs)
chr7 (71-196)||(34356414-34356539)
chr7 (71-196)||(35047200-35047325)


Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 366
Target Start/End: Complemental strand, 49974258 - 49973913
Alignment:
Q  21 gccgcagctttcaattccaaacgacgacagaatcagtgctttgccggacgcacttctttatcatgttctttcctttcttactactaaagacagtgccgcc 120  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49974258 gccgcagctttcaattccaaacgaagacagaatcagtgctttgccggactcacttctttatcatgttctttcctttcttactactaaagacagtgccgcc 49974159  T
Q  121 acaagcattctctcgaagaagtggaaaccactctggctctcacaactcatcctccgcttcgatgaccaaccctttcaagaggctttaaccttttccaatt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49974158 acaagcattctctcgaagaagtggaaaccactctggctctcacaactcatcctccgcttcgatgaccaaccctttcaagaggctttaaccttttccaatt 49974059  T
Q  221 ttgtcaactccgtcattgccaatcgagataaaaccctacccatccgctcgttccaccttaagtgctgcttccttaatagagatatccatgattttcttta 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49974058 ttgtcaactccgtcattgccaatcgagataaaaccctacccatccgctcgttccaccttaagtgctgctttcttaatagagatatccatgattttcttta 49973959  T
Q  321 tactgctgtaaaaagcggagttgaaaacctcaccattgatctctgc 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  49973958 tactgctgtaaaaagcggagttgaaaacctcaccattgatctctgc 49973913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 225
Target Start/End: Complemental strand, 23224742 - 23224588
Alignment:
Q  71 cacttctttatcatgttctttcctttcttactactaaagacagtgccgccacaagcattctctcgaagaagtggaaaccactctggctctcacaactcat 170  Q
    |||||||| ||||  |||| |||| |||| | || |||||||  |||| |||||||||||||||  |||  |||||||||||||  ||||||||||||||    
T  23224742 cacttcttcatcacattctctcctgtcttcccaccaaagacacagccgtcacaagcattctctcagagagatggaaaccactctttctctcacaactcat 23224643  T
Q  171 cctccgcttcgatgaccaaccctttcaagaggctttaaccttttccaattttgtc 225  Q
    |||| |||||||| || | |  |||| ||| |||||||||||||| |||||||||    
T  23224642 cctctgcttcgattacaagcattttcgagacgctttaaccttttctaattttgtc 23224588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 39558421 - 39558563
Alignment:
Q  46 gacagaatcagtgctttgccggacgcacttctttatcatgttctttcctttcttactactaaagacagtgccgccacaagcattctctcgaagaagtgga 145  Q
    ||||||||||||| | | ||||||||||||||| ||||  | || || |||||| |||| ||||||  ||| ||||||| ||| ||||| |||| |||||    
T  39558421 gacagaatcagtgatcttccggacgcacttcttcatcaaatcctctcttttcttcctaccaaagacgctgcggccacaaccatcctctcaaagaggtgga 39558520  T
Q  146 aaccactctggctctcacaactcatcctccgcttcgatgacca 188  Q
    | |||||||  ||||| || ||||| ||||| |||||||||||    
T  39558521 agccactcttcctctcgcagctcatactccgattcgatgacca 39558563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 276
Target Start/End: Complemental strand, 49857960 - 49857730
Alignment:
Q  46 gacagaatcagtgctttgccggacgcacttctttatcatgttctttcctttcttactactaaagacagtgccgccacaagcattctctcgaagaagtgga 145  Q
    ||||||||||||||  | || ||| ||||| || ||||| |||| ||||||||| |  | ||||||    ||||||||| | | ||||| |||| |||||    
T  49857960 gacagaatcagtgcgcttccagactcacttgttcatcatattctctcctttcttccgtcgaaagacgccaccgccacaaccgtcctctccaagaggtgga 49857861  T
Q  146 aaccactctggctctcacaactcatcctccgcttcgatgaccaaccctttcaagaggctttaaccttttccaattttgtcaactccgtcattgccaatcg 245  Q
    |||| || |||||||   |||||||| ||| |||| || |||||||||||| |||  |||| ||||||||||| || ||| |||| | ||| |||||||     
T  49857860 aaccgctatggctcttggaactcatcatccacttcaatcaccaaccctttccagatactttcaccttttccaacttcgtcgactcagccatggccaatca 49857761  T
Q  246 agataaaaccctacccatccgctcgttccac 276  Q
    |||||| || | ||| |||| ||| ||||||    
T  49857760 agataacactcaacctatcctctcattccac 49857730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 260
Target Start/End: Complemental strand, 4245 - 4030
Alignment:
Q  46 gacagaatcagtgctttgccggacgcacttctttatcatgttctttcctttcttactactaaagacagtgccgccacaagcattctctcgaagaagtgga 145  Q
    |||||||||||||   | |||||| |||||||||||| | |||||||||||||| | || ||||||  |||||||||||  || || || || | |||||    
T  4245 gacagaatcagtgtcctcccggactcacttctttatcgtattctttcctttcttccgaccaaagacgctgccgccacaacaatcctatcaaaaaggtgga 4146  T
Q  146 aaccactctggctctcacaactcatcctccgcttcgatgaccaaccctttcaagaggctttaaccttttccaattttgtcaactc-cgtcattgccaatc 244  Q
    | ||||| |||||||||||||||||| ||   |||||| |||||  ||||| | | ||||||||| ||   ||||||||  ||||  ||||| |||||||    
T  4145 agccactatggctctcacaactcatcttcaaattcgataaccaaagctttccaaatgctttaaccattcataattttgtggactcttgtcatcgccaatc 4046  T
Q  245 gagataaaaccctacc 260  Q
    ||||||||||||||||    
T  4045 gagataaaaccctacc 4030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 3984 - 3817
Alignment:
Q  27 gctttcaattccaaacgacgacagaatcagtgctttgccggacgcacttctttatcatgttctttcctttcttactactaaagacagtgccgccacaagc 126  Q
    |||||||||||||   || ||||||||||||||| | |||||  |||||||||||||  ||||||| |||||| | |  ||||||| |||||| ||||      
T  3984 gctttcaattccaggagaagacagaatcagtgctctaccggattcacttctttatcacattctttcttttcttccaatgaaagacactgccgcaacaacg 3885  T
Q  127 attctctcgaagaagtggaaaccactctggctctcacaactcatcctccgcttcgatgaccaacccttt 195  Q
     | ||||| || | ||||||||||||||  |||||||||||||| |||  |||||| || |||||||||    
T  3884 gtcctctcaaaaaggtggaaaccactcttcctctcacaactcatactcaacttcgaaga-caacccttt 3817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 260
Target Start/End: Complemental strand, 5791 - 5576
Alignment:
Q  46 gacagaatcagtgctttgccggacgcacttctttatcatgttctttcctttcttactactaaagacagtgccgccacaagcattctctcgaagaagtgga 145  Q
    |||||||||||||   | |||||| |||||||||||| | |||||||||||||| | || ||||||  |||||||||||  || || || || | |||||    
T  5791 gacagaatcagtgtcctcccggactcacttctttatcgtattctttcctttcttccgaccaaagacgctgccgccacaacaatcctatcaaaaaggtgga 5692  T
Q  146 aaccactctggctctcacaactcatcctccgcttcgatgaccaaccctttcaagaggctttaaccttttccaattttgtcaactc-cgtcattgccaatc 244  Q
    | ||||| |||||||||||||||||| ||   |||||| |||||  ||||| | | ||||||||| ||   ||||||||  ||||  ||||| |||||||    
T  5691 agccactatggctctcacaactcatcttcaaattcgataaccaaagctttccaaatgctttaaccattcataattttgtggactcttgtcatcgccaatc 5592  T
Q  245 gagataaaaccctacc 260  Q
    ||||||||||||||||    
T  5591 gagataaaaccctacc 5576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 5530 - 5363
Alignment:
Q  27 gctttcaattccaaacgacgacagaatcagtgctttgccggacgcacttctttatcatgttctttcctttcttactactaaagacagtgccgccacaagc 126  Q
    |||||||||||||   || ||||||||||||||| | |||||  |||||||||||||  ||||||| |||||| | |  ||||||| |||||| ||||      
T  5530 gctttcaattccaggagaagacagaatcagtgctctaccggattcacttctttatcacattctttcttttcttccaatgaaagacactgccgcaacaacg 5431  T
Q  127 attctctcgaagaagtggaaaccactctggctctcacaactcatcctccgcttcgatgaccaacccttt 195  Q
     | ||||| || | ||||||||||||||  |||||||||||||| |||  |||||| || |||||||||    
T  5430 gtcctctcaaaaaggtggaaaccactcttcctctcacaactcatactcaacttcgaaga-caacccttt 5363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 34356539 - 34356414
Alignment:
Q  71 cacttctttatcatgttctttcctttcttactactaaagacagtgccgccacaagcattctctcgaagaagtggaaaccactctggctctcacaactcat 170  Q
    ||||||||||| || ||||||||||| || | | ||||||    ||| ||||||| || ||||| |||| ||||| |||||| ||||||||||||||| |    
T  34356539 cacttctttattatattctttcctttgtttcgattaaagatgcagccaccacaagtatcctctcaaagaggtggagaccactttggctctcacaactctt 34356440  T
Q  171 cctccgcttcgatgaccaaccctttc 196  Q
    ||||  ||| |||||| |||| ||||    
T  34356439 cctcaacttggatgacgaaccatttc 34356414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 196
Target Start/End: Original strand, 35047200 - 35047325
Alignment:
Q  71 cacttctttatcatgttctttcctttcttactactaaagacagtgccgccacaagcattctctcgaagaagtggaaaccactctggctctcacaactcat 170  Q
    ||||||||||| || ||||||||||| || | | ||||||    ||| ||||||| || ||||| |||| || || |||||| ||||||||||||||| |    
T  35047200 cacttctttattatattctttcctttatttcgattaaagatgccgccaccacaagtatcctctcaaagaggtcgagaccactttggctctcacaactctt 35047299  T
Q  171 cctccgcttcgatgaccaaccctttc 196  Q
    ||||  ||| |||||| |||| ||||    
T  35047300 cctcaacttggatgacgaaccatttc 35047325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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