View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_low_10 (Length: 336)
Name: NF3403_low_10
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 40093275 - 40093583
Alignment:
| Q |
12 |
tcatcactatatctaacatgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggt |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093275 |
tcattactatatctaacatgaaccatatacacatcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggt |
40093374 |
T |
|
| Q |
112 |
ttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40093375 |
ttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatag |
40093474 |
T |
|
| Q |
212 |
ttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttcc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093475 |
ttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttcc |
40093574 |
T |
|
| Q |
312 |
ctaagaaac |
320 |
Q |
| |
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||||||||| |
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| T |
40093575 |
ctaagaaac |
40093583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 24 - 318
Target Start/End: Original strand, 40062635 - 40062950
Alignment:
| Q |
24 |
ctaacatgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggc |
123 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
40062635 |
ctaacatgaaccatatgcacatcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaagaatggc |
40062734 |
T |
|
| Q |
124 |
aacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttcactt------------ttgatcgaagactatttattagtctta----- |
206 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |
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| T |
40062735 |
aacaacactcttgatctctcctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagacttgatcaaagactatttattagtcttaatgga |
40062834 |
T |
|
| Q |
207 |
----catagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaaga |
302 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||| || |
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| T |
40062835 |
gattgattgttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagt |
40062934 |
T |
|
| Q |
303 |
ctactttccctaagaa |
318 |
Q |
| |
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|||||||||||||||| |
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| T |
40062935 |
ctactttccctaagaa |
40062950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 24 - 318
Target Start/End: Original strand, 40080984 - 40081300
Alignment:
| Q |
24 |
ctaacatgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggc |
123 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40080984 |
ctaatatgaaccatatacacatcagaactatggagccttttttgacacagtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggc |
40081083 |
T |
|
| Q |
124 |
aacaagactcttgatctctcctctcggaagtggacatatcaggtcagtctt-cacttttgatcgaagactatttattagtct------------------ |
204 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||||||||| ||| |
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| T |
40081084 |
aacaacactcttgatctctcctctcggaagtggacatatcaggtcaatcttaaatttttgatcgaaaactatttattattctttctttatcactttaatg |
40081183 |
T |
|
| Q |
205 |
---tacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaag |
301 |
Q |
| |
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||||| |||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||| || |
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| T |
40081184 |
gaatacattgttaatggagttaattttttcgatacagattggcctaaaaggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacag |
40081283 |
T |
|
| Q |
302 |
actactttccctaagaa |
318 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
40081284 |
tctacttaccctaagaa |
40081300 |
T |
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