View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_low_11 (Length: 331)
Name: NF3403_low_11
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 2424979 - 2425279
Alignment:
| Q |
12 |
tcatcaccatgtaaatttacaagtgttttcaactcagctctgcgaaaaagcgcttcttgtctatgccctaacaaataatccaacaactgaatagaacaca |
111 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2424979 |
tcattaccatgcaaatttacaagtgttttcaactcagctctgcgaaaaagcgcttcttgtctatgccctaacaaataatccaacaactgaatagaacaca |
2425078 |
T |
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| Q |
112 |
atgaaatcaagattttaaaatcaaattggtcaagttttattcaaataaatatcatgttgaatgtatttgtatcatgcaccttgctaattggataagcaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2425079 |
atgaaatcaagattttaaaatcaaattggtcaagttttgttcaaataaatatcatgttgaatgtatttgtatcatgcaccttgctaattggataagcaac |
2425178 |
T |
|
| Q |
212 |
aggtaaacatatccacacaagaacacgaacaatcggagccaccgttgcaccgatcgttaaaccataccgggaacaaactgattgaggaataatcttcaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2425179 |
aggtaaacatatccacacaagaacacgaacaatcggagccaccgttgcaccgattgttaaaccataccgggaacaaactgattgaggaataatcttcaaa |
2425278 |
T |
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| Q |
312 |
g |
312 |
Q |
| |
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| |
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| T |
2425279 |
g |
2425279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 36723539 - 36723418
Alignment:
| Q |
188 |
caccttgctaattggataagcaacaggtaaacatatccacacaagaacacgaacaatcggagccaccgttgcaccgatcgttaaaccataccgggaacaa |
287 |
Q |
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|||||||||||||||| ||||||| || |||||||||| ||||| || || |||| |||| || | |||||| || | |||||||| || |||||| |
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| T |
36723539 |
caccttgctaattggaaaagcaactggataacatatccatacaagcacgcggacaaaaggagtgactgatgcaccaatggccaaaccatatcgagaacaa |
36723440 |
T |
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| Q |
288 |
actgattgaggaataatcttca |
309 |
Q |
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|||||||| || |||||||||| |
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| T |
36723439 |
actgattggggtataatcttca |
36723418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 36723744 - 36723656
Alignment:
| Q |
12 |
tcatcaccatgtaaatttacaagtgttttcaactcagctctgcgaaaaagcgcttcttgtctatgccctaacaaataatccaacaactg |
100 |
Q |
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|||| |||||| |||| ||| |||||||||||||| |||||||| ||||| ||||| | || ||| || | |||||| ||||||||||| |
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| T |
36723744 |
tcattaccatgcaaatctactagtgttttcaactcggctctgcggaaaagggcttcatttcgatgacccagcaaatagtccaacaactg |
36723656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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