View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_low_14 (Length: 252)
Name: NF3403_low_14
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_low_14 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 46313168 - 46313404
Alignment:
| Q |
19 |
atcattgttcggaagaaccttagttcgattcctaggtggaacaagtcttggccggtatcattacctcatggtcgaactccggattaccagggcccctttc |
118 |
Q |
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| T |
46313168 |
atcattgttcggaagaaccctagttcgattcctaggtggaacaagtcttggccggtatcattacctcatggtcgaactccggattaccagggcccctttc |
46313267 |
T |
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| Q |
119 |
cccggaaactggagggttaatgccaaaag---nnnnnnnnnnnnnnnnattatcagaccatttaatatgttaataacttgttattagtttggttagtctg |
215 |
Q |
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| T |
46313268 |
cccggaaactggagggttaatgccaaaagttttttttttttattttttattatcagaccatttaatctgttaataacttgttattagtttggttagtctg |
46313367 |
T |
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| Q |
216 |
ttnnnnnnnncttgttattagtttctgaactaaaaat |
252 |
Q |
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|| ||||||||||||||||||||||||||| |
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| T |
46313368 |
ttaaaaaaaacttgttattagtttctgaactaaaaat |
46313404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 24978763 - 24978864
Alignment:
| Q |
22 |
attgttcggaagaaccttagttcgattcctaggtggaacaagtcttggccgg--tatcattacctcatggtcgaactccggattaccagggcccctttcc |
119 |
Q |
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| T |
24978763 |
attgtttgggagaacgtgagttcgattcctaggtggaacaattcttggccgggttatacttacctcaaagccgaactctgaattaccaaggcccccttcc |
24978862 |
T |
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| Q |
120 |
cc |
121 |
Q |
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|| |
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| T |
24978863 |
cc |
24978864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 3195427 - 3195482
Alignment:
| Q |
92 |
gaactccggattaccagggcccctttcccc-ggaaactggagggttaatgccaaaa |
146 |
Q |
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| T |
3195427 |
gaactccggattaccagggcctctttcccctggaaactggagggttaacgccaaaa |
3195482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 49634456 - 49634527
Alignment:
| Q |
74 |
tatcattacctcatggtcgaactccggattaccagggcccctttccccggaaactggagggttaatgccaaaa |
146 |
Q |
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| T |
49634456 |
tatccttacctcaaggccaaactccggattaccaaggcccctttccctgg-aaccggagggttaatgcaaaaa |
49634527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 10877154 - 10877274
Alignment:
| Q |
32 |
agaaccttagttcgattcctaggtggaacaagtcttggccgg--tatcattacctcatggtcgaactccggattaccagggcccc--tttcccc-ggaaa |
126 |
Q |
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||||||| ||||||||||||| || |||||| |||||||| | |||| ||||||||||| ||||||| ||| |||||| |||| ||||||| | || |
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| T |
10877154 |
agaacctgagttcgattcctatgtagaacaattcttggccagactatccttacctcatggccgaactctagatcaccaggaccccaatttcccctaggaa |
10877253 |
T |
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| Q |
127 |
ctggagggttaatgccaaaag |
147 |
Q |
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| T |
10877254 |
ccggacggttaatgccaaaag |
10877274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 22506316 - 22506425
Alignment:
| Q |
40 |
agttcgattcctaggtggaacaagtcttggccgg--tatcattacctcatggtcgaactccggattaccagggcccctttcc-ccggaaactggagggtt |
136 |
Q |
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|||||||||||||| |||||||| | |||||| | |||| |||||||| | |||||||||| |||| |||| |||||||| | || ||| |||||||| |
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| T |
22506316 |
agttcgattcctagttggaacaattattggccagactatccttacctcactgccgaactccgggttactagggaccctttccactgggaaccggagggtt |
22506415 |
T |
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| Q |
137 |
aatgccaaaa |
146 |
Q |
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| T |
22506416 |
aacgccaaaa |
22506425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 53380934 - 53380971
Alignment:
| Q |
34 |
aaccttagttcgattcctaggtggaacaagtcttggcc |
71 |
Q |
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||||| ||||||||||||||||||||||| |||||||| |
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| T |
53380934 |
aacctaagttcgattcctaggtggaacaattcttggcc |
53380971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 17931544 - 17931604
Alignment:
| Q |
79 |
ttacctcatggtcgaactccggattaccagggcccctttccccgga-aactggagggttaa |
138 |
Q |
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| T |
17931544 |
ttacctcacggccgaactccggattaccggggcccccttcccctgacaaccggagggttaa |
17931604 |
T |
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