View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_low_16 (Length: 247)
Name: NF3403_low_16
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 36200769 - 36201011
Alignment:
| Q |
1 |
aaagaaataataaatttgatgacagtaatataatgacagatattattcatatctaagattacaagcacaagcgtttgacagnnnnnnn-caaaatcttag |
99 |
Q |
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| T |
36200769 |
aaagaaataatcaatttgatgacagtaatataatgacagatattattcatatctaagattacaagcacaagcgtttgacagaaaaaaaacaaaatcttag |
36200868 |
T |
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| Q |
100 |
tacatctacaccaacacagcacctgtcaaccactaatcaatctaacatggtgctttccatatgatgtgcatgtttgaactacaagttttcgtcaactctg |
199 |
Q |
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| T |
36200869 |
ttcatctacaccaacacagcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttgaactacaagttttcgtcaactctg |
36200968 |
T |
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| Q |
200 |
cttcaaaca--ctagtaggaaaagaaatcatatcatgtctctg |
240 |
Q |
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| T |
36200969 |
cttcaaacagtctagtaggaaaagaaatcatatcatgtctctg |
36201011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 240
Target Start/End: Original strand, 36207715 - 36207868
Alignment:
| Q |
89 |
caaaatcttagtacatctacaccaacacagcacctgtcaaccactaatcaatctaacatggtgctttccatatgatgtgcatgtttgaactacaagtttt |
188 |
Q |
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| T |
36207715 |
caaaatcttagttcatatacaacaacaaatcacatgtgaacctctaatctctccaacatggtgttttcgatatgatgtgcatgtttggacttcaaatttt |
36207814 |
T |
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| Q |
189 |
cgtcaactctgcttc--aaacactagtaggaaaagaaatcatatcatgtctctg |
240 |
Q |
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| T |
36207815 |
catcaactctacttctaacacactggttggaagagaaatcatgtcatgtctctg |
36207868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 36184485 - 36184684
Alignment:
| Q |
45 |
attcatatctaagattacaagcacaagcgtttgacagnnnnnnncaaaatcttagtacatctacaccaacacagcacctgtcaaccact----aatcaat |
140 |
Q |
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| T |
36184485 |
attcatatcttagattacaagcacaagcatttaacagaaaaa--caaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctct |
36184582 |
T |
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| Q |
141 |
ctaacatggtgctttccatatgatgtgcatgtttgaactacaagttttcgtcaactctgcttcaaaca--ctagtaggaaaagaaatcatatcatgtctc |
238 |
Q |
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| T |
36184583 |
ccaacatggtgtcttccgtatgatattcatgtttggacttcagattttcatcaactctgcttctaacactctagttggaagaaaaatcatgtcatgtctc |
36184682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 36213214 - 36213266
Alignment:
| Q |
158 |
atatgatgtgcatgtttgaactacaagttttcgtcaactctgcttcaaacact |
210 |
Q |
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| T |
36213214 |
atatgatgtgcatgtttggacttcaaatttttatcaactctgcttcaaacact |
36213266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 36213145 - 36213190
Alignment:
| Q |
36 |
acagatattattcatatctaagattacaagcacaagcgtttgacag |
81 |
Q |
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| T |
36213145 |
acagatattattcatatcatagatttcaagcacaagcatttgacag |
36213190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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