View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_low_17 (Length: 241)
Name: NF3403_low_17
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 22530242 - 22530459
Alignment:
| Q |
20 |
tggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttgggggtaaactttcaagaggatatttaaaataggattga |
119 |
Q |
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| T |
22530242 |
tggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtatgggaaagaagttgggggtaaatttccaaggggatatttctaataggtttga |
22530341 |
T |
|
| Q |
120 |
tgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttggtgggaggtgcgacggtg-gttttggtgtggtg |
218 |
Q |
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|||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| || |||| ||||||||||||| |
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| T |
22530342 |
tgttctgtcaggtgtgggaagaaaaaataaagagggtaacggggaagggaagtgaggtcgaggattggtgggaggtgtgagggtgttttttggtgtggtg |
22530441 |
T |
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| Q |
219 |
gagtagtagttgtgatga |
236 |
Q |
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|||| ||||| ||||||| |
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| T |
22530442 |
gagtggtagtggtgatga |
22530459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 29549419 - 29549202
Alignment:
| Q |
20 |
tggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttgggggtaaactttcaagaggatatttaaaataggattga |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| || ||||||| ||||| ||| |||| || | |
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| T |
29549419 |
tggttcttcatggaagtagtaaggctatttcggatgatgttaaaggaatgggaaagatattgggggtgaattttcaaggggatacacaaagtaggtttaa |
29549320 |
T |
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| Q |
120 |
tgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttggtgggaggtg-cgacggtggttttggtgtggtg |
218 |
Q |
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||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||| ||||||||||| |
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| T |
29549319 |
tgtattgtcaggtgcgggaagaaaaaataaagagggtgatggggaagagaagtgaggccgagggttggtgggaggtgtggagggtgggtttggtgtggta |
29549220 |
T |
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| Q |
219 |
gagtagtagttgtgatga |
236 |
Q |
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|||| || || ||||||| |
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| T |
29549219 |
gagtggtcgtggtgatga |
29549202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 6921108 - 6921270
Alignment:
| Q |
25 |
cttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttgggggtaaactttcaagaggatatttaaaataggattgatgttt |
124 |
Q |
| |
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|||||||| | ||| |||||| | ||||||||||||| || |||| ||| || || |||| || ||||||| ||||| | |||||||| ||||||| | |
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| T |
6921108 |
cttcatggtaatagcaaggctttatcggatgatgttagggggatgggtaagttggtgagggtgaattttcaaggggataatcaaaataggtttgatgtgt |
6921207 |
T |
|
| Q |
125 |
tgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttgg |
187 |
Q |
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||||||| || || |||||||||||||||||||| || | ||||| | |||||||||||||| |
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| T |
6921208 |
tgtcaggagctggtagaaaaaataaagagggtgatggtggagagagttaaggtcgagggttgg |
6921270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 54874695 - 54874533
Alignment:
| Q |
25 |
cttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttgggggtaaactttcaagaggatatttaaaataggattgatgttt |
124 |
Q |
| |
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|||||||| | ||| |||||| | ||||||||||||| || |||||||| | ||||||| || ||||||| ||||||| |||||||| ||||||| | |
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| T |
54874695 |
cttcatggtaatagcaaggctttatcggatgatgttagggggatgggaaagttagtgggggtgaattttcaaggggatattcaaaataggtttgatgtgt |
54874596 |
T |
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| Q |
125 |
tgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttgg |
187 |
Q |
| |
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||||||||| ||||||||||||||||||| ||| || | ||||| || ||| |||||||||| |
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| T |
54874595 |
tgtcaggtgttggaagaaaaaataaagaggttgatggtggagagaggtaaggccgagggttgg |
54874533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 33096239 - 33096279
Alignment:
| Q |
118 |
gatgttttgtcaggtgcgggaagaaaaaataaagagggtga |
158 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33096239 |
gatgtgttgtcaggtgcgggaagaaaaaataaagagggtga |
33096279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 13154251 - 13154330
Alignment:
| Q |
116 |
ttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttggtgggaggtg |
196 |
Q |
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||||||| |||||||| | ||||||||||||||||||||| || ||| ||| ||||| ||| | |||||||||| |||||| |
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| T |
13154251 |
ttgatgtgttgtcaggggtgggaagaaaaaataaagagggagatgggaaagggaagt-aggccaagggttggtgtgaggtg |
13154330 |
T |
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