View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_low_19 (Length: 238)
Name: NF3403_low_19
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 423056 - 423284
Alignment:
| Q |
1 |
catttgcaagaaaggaacccaatttgtcttccctttctttcttcttaatcttcttccccttgatgtcatatccaatatggggttcatcctcataccactt |
100 |
Q |
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| T |
423056 |
catttgcaagaaaggaacccaatttgtcttccctttctttcttcttaatcttcttccccttgatgtcatatccaatatggggttcatcctcataccactt |
423155 |
T |
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| Q |
101 |
caaagggacctctccaatggtattccgaggagccacctacggaaaaaggaaacgcagagcaatcaaattcaagtccatagtaatataaaagggaattgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
423156 |
caaagggacctctccaatggtattccgaggagccacctacggaaaaaggaaacgcagagcaatcaaattcaagtccatagtaatataaatgggaattgat |
423255 |
T |
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| Q |
201 |
tacaacaaataattataatgatgatgatg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
423256 |
tacaacaaataattataatgatgatgatg |
423284 |
T |
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