View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_low_20 (Length: 236)
Name: NF3403_low_20
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_low_20 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 36200412 - 36200633
Alignment:
| Q |
15 |
aacaacgacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctccctctcttttctgaaccacatag |
114 |
Q |
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| T |
36200412 |
aacaacgacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctctctctcttttctgaaccacatag |
36200511 |
T |
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| Q |
115 |
gaaagtaatgcaagaaacaagag-aatcttaccacgaccaaggtgtatgcagtgtaactaatgaagtacagataaagtttcattggatctgatactcaag |
213 |
Q |
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| T |
36200512 |
gaaaataatgcaagaaacaagagaaatcttaccacgaccaaggtgtatgcagtgtaactaatgaa-tacaaataaagtttcattggatctgatactcaag |
36200610 |
T |
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| Q |
214 |
aagtgagaaagcttcatttgacc |
236 |
Q |
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| T |
36200611 |
aagtgagaaagcttcatttgacc |
36200633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 36209626 - 36209759
Alignment:
| Q |
15 |
aacaacgacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctccctctcttttctgaaccacatag |
114 |
Q |
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||||| |||||||||||||||| ||||||||||||| ||||||||| || || | | ||||||| |||||||| |||||| |||| |||||||| || |
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| T |
36209626 |
aacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttccctccctttaaagaaccacagag |
36209725 |
T |
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| Q |
115 |
gaaagtaatgcaagaaacaagag-aatcttacca |
147 |
Q |
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| T |
36209726 |
gaaattactgcaagaaacaagggaaatcttacca |
36209759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 36196508 - 36196620
Alignment:
| Q |
21 |
gacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctccctctcttttctgaaccacataggaaagt |
120 |
Q |
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||||||||||||||| |||||| |||||| ||||||||| ||||| ||||||| ||||||||||||||||||| |||| |||||||| | |||| | |
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| T |
36196508 |
gacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaattcctccctccctttaaagaaccacagacgaaatt |
36196607 |
T |
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| Q |
121 |
aatgcaagaaaca |
133 |
Q |
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| T |
36196608 |
actgcaagaaaca |
36196620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 36188199 - 36188301
Alignment:
| Q |
29 |
aacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctccctctcttttctgaaccacataggaaagtaatgcaag |
128 |
Q |
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|||||||| |||||||||||||| ||||||||| ||||| | | ||||||| ||||||||| ||||| |||| || ||||| |||||| || |||||| |
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| T |
36188199 |
aacagaacaaaccataccaaacctagttcaaaccattttattagagaggaaggtgaattcccccctccctttaaagagccacagaggaaattactgcaag |
36188298 |
T |
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| Q |
129 |
aaa |
131 |
Q |
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||| |
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| T |
36188299 |
aaa |
36188301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 36212931 - 36212989
Alignment:
| Q |
177 |
aagtacagataaagtttcattggatctgatactcaagaagtgagaaagcttcatttgac |
235 |
Q |
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| T |
36212931 |
aagttcagataaaatttcattagatctgatacccgagaagtgagaaagcttcatttgac |
36212989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 36184251 - 36184305
Alignment:
| Q |
25 |
tgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaa |
79 |
Q |
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| T |
36184251 |
tgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaa |
36184305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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