View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3403_low_21 (Length: 227)

Name: NF3403_low_21
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3403_low_21
NF3403_low_21
[»] scaffold0059 (1 HSPs)
scaffold0059 (7-109)||(62484-62586)
[»] chr1 (3 HSPs)
chr1 (7-109)||(15885529-15885631)
chr1 (7-104)||(12637329-12637426)
chr1 (7-90)||(12610236-12610319)
[»] chr6 (1 HSPs)
chr6 (7-104)||(21780144-21780241)
[»] chr3 (6 HSPs)
chr3 (7-102)||(23024603-23024698)
chr3 (7-102)||(23149089-23149184)
chr3 (7-104)||(23036501-23036598)
chr3 (7-100)||(23146251-23146344)
chr3 (5-102)||(23140375-23140472)
chr3 (38-104)||(22916443-22916509)
[»] scaffold0554 (1 HSPs)
scaffold0554 (39-104)||(6326-6391)


Alignment Details
Target: scaffold0059 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 62484 - 62586
Alignment:
Q  7 ctttcttcatcactcttggatcctttaccaactctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctgaaaatt 106  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| | |  || ||||||||||||||||| ||||||||||||||||||||||    
T  62484 ctttcttcatcactcttggatctcttaccaactctgccattgcccaaactacgctcaaagctgatgtatcacctccagcaccaaacatgtcctgaaaatt 62583  T
Q  107 aaa 109  Q
    |||    
T  62584 aaa 62586  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 15885631 - 15885529
Alignment:
Q  7 ctttcttcatcactcttggatcctttaccaactctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctgaaaatt 106  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||||||||||| | ||  |||||||| |||||| |||||||||||||||||||| |    
T  15885631 ctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcaccaaacatgtcctgaaaagt 15885532  T
Q  107 aaa 109  Q
    |||    
T  15885531 aaa 15885529  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 12637329 - 12637426
Alignment:
Q  7 ctttcttcatcactcttggatcctttaccaactctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctgaaaa 104  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    |||||| ||||||||| ||||||  ||||||||||||    
T  12637329 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatgatgtcctgaaaa 12637426  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 12610236 - 12610319
Alignment:
Q  7 ctttcttcatcactcttggatcctttaccaactctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaa 90  Q
    |||||||||||||||||  |||| |||||||||||| ||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  12610236 ctttcttcatcactcttttatcccttaccaactctgacattgcccaaactatagtagaagctgatgtatcacctccagcaccaa 12610319  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 21780144 - 21780241
Alignment:
Q  7 ctttcttcatcactcttggatcctttaccaactctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctgaaaa 104  Q
    |||||||||| | |||||||||| ||||||  ||| ||||||||||| |||||||     ||||||| ||||||||| ||||||||||||||||||||    
T  21780144 ctttcttcattattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaa 21780241  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 23024603 - 23024698
Alignment:
Q  7 ctttcttcatcactcttggatcctttaccaactctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctgaa 102  Q
    |||||||||| | |||||||| ||||||||  ||||||||||||||| |||||||     ||||||| ||||||||| ||||||| ||||||||||    
T  23024603 ctttcttcattattcttggattctttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaa 23024698  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 23149089 - 23149184
Alignment:
Q  7 ctttcttcatcactcttggatcctttaccaactctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctgaa 102  Q
    |||||||||| | ||||||||||||||||| |||| ||||||||||| |||||||     ||||||| || |||||| ||||||| ||||||||||    
T  23149089 ctttcttcattattcttggatcctttaccatctctaccattgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaaatgtcctgaa 23149184  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 23036501 - 23036598
Alignment:
Q  7 ctttcttcatcactcttggatcctttaccaactctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctgaaaa 104  Q
    |||||||||| | |||||||| | ||||||  ||||||||||||||| |||||||     ||||||| ||||||||| ||||||| ||||||||||||    
T  23036501 ctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaaa 23036598  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 23146251 - 23146344
Alignment:
Q  7 ctttcttcatcactcttggatcctttaccaactctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctg 100  Q
    |||||||||| | |||||||||||||||||| ||| ||||||||||| |||||||     ||||||| ||||||||| || |||| ||||||||    
T  23146251 ctttcttcatgattcttggatcctttaccaattctaccattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctg 23146344  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 23140375 - 23140472
Alignment:
Q  5 cactttcttcatcactcttggatcctttaccaactctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctgaa 102  Q
    |||||||||||| | |||||||||| ||| ||  ||| ||||||||||| |||||||     ||||||| ||||||||| ||||||| ||||||||||    
T  23140375 cactttcttcattattcttggatcccttatcatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaa 23140472  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 22916509 - 22916443
Alignment:
Q  38 ctctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctgaaaa 104  Q
    ||||||||||||||| | |||||||||| ||||||| |||| |||||| ||| |||| |||| ||||    
T  22916509 ctctgccattgcccataatatggtagaagctgatgtctcacttccacctccatacatatccttaaaa 22916443  T

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Target: scaffold0554 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 6391 - 6326
Alignment:
Q  39 tctgccattgcccaaactatggtagaacctgatgtatcacctccaccaccaaacatgtcctgaaaa 104  Q
    ||||||||||||||| ||||||| |   ||||||||||||||||| ||||||| ||||||| ||||    
T  6391 tctgccattgcccaatctatggtggttgctgatgtatcacctccagcaccaaaaatgtcctaaaaa 6326  T

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