View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3403_low_3 (Length: 644)

Name: NF3403_low_3
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3403_low_3
NF3403_low_3
[»] chr7 (2 HSPs)
chr7 (197-619)||(29622287-29622705)
chr7 (446-507)||(25829752-25829816)
[»] chr5 (10 HSPs)
chr5 (188-619)||(35386728-35387159)
chr5 (392-624)||(35371211-35371443)
chr5 (421-626)||(35411367-35411572)
chr5 (184-304)||(35411705-35411824)
chr5 (354-545)||(23935835-23936023)
chr5 (421-619)||(35426128-35426326)
chr5 (553-619)||(35367580-35367646)
chr5 (540-615)||(35377173-35377248)
chr5 (421-504)||(35755674-35755757)
chr5 (432-504)||(35367680-35367752)
[»] chr2 (6 HSPs)
chr2 (380-626)||(30626751-30626997)
chr2 (380-602)||(30663701-30663923)
chr2 (380-602)||(30672381-30672603)
chr2 (162-299)||(30663974-30664111)
chr2 (162-299)||(30672654-30672791)
chr2 (184-299)||(30627048-30627163)
[»] chr3 (1 HSPs)
chr3 (365-615)||(1154394-1154644)
[»] chr1 (2 HSPs)
chr1 (422-626)||(10414954-10415158)
chr1 (542-619)||(10419960-10420037)
[»] chr8 (3 HSPs)
chr8 (540-616)||(13564967-13565043)
chr8 (578-615)||(15294450-15294487)
chr8 (578-615)||(15474819-15474856)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 197 - 619
Target Start/End: Original strand, 29622287 - 29622705
Alignment:
Q  197 aactaacaaaatttccaaacaataccatgtatttaatgcaactgactacaaatacaaattattatccccatacatagaaaataaaattcaaagtaatgca 296  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||      ||| ||||| |  |||||| ||||  |||    
T  29622287 aactagcaatatttccaaacaataccatgtatttagtgcaactgactacaaatacagattattat------acacagaaattttaattcatagtatcgca 29622380  T
Q  297 acaacaacaacaaaagcacaattgatcgatggctagagactagtcaagctttcttgtgaacaaaattattttcttatcaaagtagcaacgga-----tcc 391  Q
    |||| |||||  |   |||| |||||  ||||||| |||||| |||| |||||||||||||| |||||||||||||||| |||||||||| |     |||    
T  29622381 acaataacaatca---cacacttgatttatggctacagactactcaacctttcttgtgaacacaattattttcttatcacagtagcaacgcaacgaatcc 29622477  T
Q  392 tatcatggaaactttgatttgatttcattcaacttagctataacatctttcatcagcattcgatgagcaggaaactcttcagaacatgcaactccaattg 491  Q
    || ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||     
T  29622478 tagcatggaaactttgatttgatttcattcaacttaactataacatcttttattagcattcgatgagcaggaaactcttgagaacatgcaactccaattc 29622577  T
Q  492 cggcaaacatcaccaaacaactccaaatcttgtcttccacaatccctttttgatcttcagcaaatggcacgagcaaatgtgaatcgactatctcgaggat 591  Q
      |||||||||||||||||| ||| |||||||| ||||||||||||| |  |||||||||||||||| |  || ||| | ||||| |||||||| || ||    
T  29622578 tagcaaacatcaccaaacaattcctaatcttgttttccacaatccctgtccgatcttcagcaaatggtataagtaaacgggaatccactatctcaagaat 29622677  T
Q  592 tccttctggaattttcatcttacagaat 619  Q
    |||||||||||| |||||||||||||||    
T  29622678 tccttctggaatcttcatcttacagaat 29622705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 507
Target Start/End: Complemental strand, 25829816 - 25829752
Alignment:
Q  446 agcattcgatgagcaggaaactcttc---agaacatgcaactccaattgcggcaaacatcaccaa 507  Q
    |||||| |||||||||||||||||||   |||||||| |||||||||| |  |||||||||||||    
T  25829816 agcatttgatgagcaggaaactcttcttcagaacatgtaactccaattccttcaaacatcaccaa 25829752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 6e-88; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 188 - 619
Target Start/End: Complemental strand, 35387159 - 35386728
Alignment:
Q  188 ttgcatctcaactaacaaaatttccaaacaataccatgtatttaatgcaactga----------------ctacaaatacaaattattatccccatacat 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| |||||||||||||||| ||||||    
T  35387159 ttgcatctcaactaacaaaatttccaaacaataccatgtatttaatgcaacttcataccattaattgcatctacaattacaaattattatcccaatacat 35387060  T
Q  272 agaaaataaaattcaaagtaatgcaacaacaacaacaaaagcacaattgatcgatggctagagactagtcaagctttcttgtgaacaaaattattttctt 371  Q
    ||||| |  |||||||||||||||||||| ||||         || ||||||||||||||||       |||||||||||||||||| ||||||||||||    
T  35387059 agaaattgtaattcaaagtaatgcaacaaaaaca---------cacttgatcgatggctaga-------caagctttcttgtgaacacaattattttctt 35386976  T
Q  372 atcaaagtagcaacggatcctatcatggaaactttgatttgatttcattcaacttagctataacatctttcatcagcattcgatgagcaggaaactcttc 471  Q
    |||| ||||||| ||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||||| |||| ||||||||||| ||  | |||||     
T  35386975 atcacagtagcagcggttcctagcatggaaactttgatttgatttgattcaacttaactataacatcttttatcaacattcgatgagtagtgacctcttt 35386876  T
Q  472 agaacatgcaactccaattgcggcaaacatcaccaaacaactccaaatcttgtcttccacaatccctttttgatcttcagcaaatggcacgagcaaatgt 571  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||  | | ||||||||||||||| |  ||||| ||     
T  35386875 agaacatgcgactccaattgcagcaaacatcaccaaacaattcctaatcttgttttccacaatccccatctcatcttcagcaaatggaaaaagcaattga 35386776  T
Q  572 gaatcgactatctcgaggattccttctggaattttcatcttacagaat 619  Q
    ||||| |||||||| |||||| ||||||||||||| || || ||||||    
T  35386775 gaatctactatctcaaggattgcttctggaatttttattttgcagaat 35386728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 392 - 624
Target Start/End: Complemental strand, 35371443 - 35371211
Alignment:
Q  392 tatcatggaaactttgatttgatttcattcaacttagctataacatctttcatcagcattcgatgagcaggaaactcttcagaacatgcaactccaattg 491  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  35371443 tatcatggaaacattgatttgatttcattcaaattagctatagcatcttttatcaacattcgatgagcaggagactcttcagaacatgcaactccaattg 35371344  T
Q  492 cggcaaacatcaccaaacaactccaaatcttgtcttccacaatccctttttgatcttcagcaaatggcacgagcaaatgtgaatcgactatctcgaggat 591  Q
    | |||||||||||||||||| ||| |||||||| ||||||||||||| | | ||||||||||||||| |  |||||||||||||| |||||||| |||||    
T  35371343 cagcaaacatcaccaaacaattcctaatcttgttttccacaatccctgtatcatcttcagcaaatggtaaaagcaaatgtgaatctactatctcaaggat 35371244  T
Q  592 tccttctggaattttcatcttacagaatgcatg 624  Q
    |||||||||||||||||| || |||||| ||||    
T  35371243 tccttctggaattttcattttgcagaattcatg 35371211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 421 - 626
Target Start/End: Complemental strand, 35411572 - 35411367
Alignment:
Q  421 caacttagctataacatctttcatcagcattcgatgagcaggaaactcttcagaacatgcaactccaattgcggcaaacatcaccaaacaactccaaatc 520  Q
    ||||||| | ||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||| |||   |||||||||||||||||| ||| ||||    
T  35411572 caacttaacgataacatcttttatcaacattcgatgagcaggaaactcgtcagagcatgcaactccgattctagcaaacatcaccaaacaattcctaatc 35411473  T
Q  521 ttgtcttccacaatccctttttgatcttcagcaaatggcacgagcaaatgtgaatcgactatctcgaggattccttctggaattttcatcttacagaatg 620  Q
    |||| ||||||||||||| | | ||||||||||||||| |  |||||||||||||| |||||||| ||||||||||||| ||||||||| || ||||||     
T  35411472 ttgttttccacaatccctgtctcatcttcagcaaatggtaaaagcaaatgtgaatctactatctcaaggattccttctgaaattttcattttgcagaatt 35411373  T
Q  621 catgta 626  Q
    ||||||    
T  35411372 catgta 35411367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 35411824 - 35411705
Alignment:
Q  184 ttacttgcatctcaactaacaaaatttccaaacaataccatgtatttaatgcaactgactacaaatacaaattattatccccatacatagaaaataaaat 283  Q
    |||||||||| | ||||||||| ||||||||||||||||||| ||| ||| || ||||||||||| |||||||||||| || ||||||||||| || |||    
T  35411824 ttacttgcatattaactaacaatatttccaaacaataccatgcattcaataca-ctgactacaaacacaaattattataccaatacatagaaattataat 35411726  T
Q  284 tcaaagtaatgcaacaacaac 304  Q
    || |||||| ||| |||||||    
T  35411725 tcgaagtaacgcagcaacaac 35411705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 354 - 545
Target Start/End: Original strand, 23935835 - 23936023
Alignment:
Q  354 gaacaaaattattttcttatcaaagtagcaacggatcctatcatggaaactttgatttgatttcattcaacttagctataacatctttcatcagcattcg 453  Q
    ||||| |||||||||||||||| ||||||||  | ||||| ||||||||||||||||| |||||| |||||||| || |||||||||| ||   |||| |    
T  23935835 gaacataattattttcttatcacagtagcaattgttcctagcatggaaactttgattttatttcactcaacttaactgtaacatcttttatggccatttg 23935934  T
Q  454 atgagcaggaaactcttcagaacatgcaactccaattgcggcaaacatcaccaaacaactccaaatcttgtcttccacaatccctttttgat 545  Q
     |||||| |   | |||   || |||||||| |||||   ||||||||||||||| | |||| |||||||| ||||||||||| | ||||||    
T  23935935 ttgagcaaggggcactt---aaaatgcaacttcaattctagcaaacatcaccaaaaacctcctaatcttgttttccacaatccatgtttgat 23936023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 619
Target Start/End: Complemental strand, 35426326 - 35426128
Alignment:
Q  421 caacttagctataacatctttcatcagcattcgatgagcaggaaactcttcagaacatgcaactccaattgcggcaaacatcaccaaacaactcc-aaat 519  Q
    ||||||| |||||||||||||  | |||||||  |||| |||||| |||||||||||||||| ||| |||   ||||||||||| |||| |||||   ||    
T  35426326 caacttaactataacatcttttgtgagcattctctgagtaggaaattcttcagaacatgcaattcctattttagcaaacatcactaaac-actcctttat 35426228  T
Q  520 cttgtcttccacaatccctttttgatcttcagcaaatggcacgagcaaatgtgaatcgactatctcgaggattccttctggaattttcatcttacagaat 619  Q
     |||| ||||| ||    | |||||||||||||||||| ||  |||||   |||||| ||||  || || |||||||| |||||| ||||||||||||||    
T  35426227 gttgttttccataacttgtgtttgatcttcagcaaatgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaat 35426128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 553 - 619
Target Start/End: Complemental strand, 35367646 - 35367580
Alignment:
Q  553 aaatggcacgagcaaatgtgaatcgactatctcgaggattccttctggaattttcatcttacagaat 619  Q
    ||||||||  |||||||||||||| |||||||| || ||| || | |||||||||||||||||||||    
T  35367646 aaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaat 35367580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 615
Target Start/End: Complemental strand, 35377248 - 35377173
Alignment:
Q  540 tttgatcttcagcaaatggcacgagcaaatgtgaatcgactatctcgaggattccttctggaattttcatcttaca 615  Q
    ||||||||||| |||||| ||| |||||   || ||| ||||| || || ||||||||||||||||||||||||||    
T  35377248 tttgatcttcaacaaatgacacaagcaagcatggatccactatatcaagaattccttctggaattttcatcttaca 35377173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 504
Target Start/End: Complemental strand, 35755757 - 35755674
Alignment:
Q  421 caacttagctataacatctttcatcagcattcgatgagcaggaaactcttcagaacatgcaactccaattgcggcaaacatcac 504  Q
    |||||||  ||||||||||||  | |||||||  |||| |||||| |||||||||||||||||||| |||   |||||||||||    
T  35755757 caacttaattataacatcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaacatcac 35755674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 35367752 - 35367680
Alignment:
Q  432 taacatctttcatcagcattcgatgagcaggaaactcttcagaacatgcaactccaattgcggcaaacatcac 504  Q
    |||||| ||| |||| ||||||||||| ||| || ||||| |||||||||||||| |||   |||||||||||    
T  35367752 taacattttttatcaacattcgatgagtagggaattcttcggaacatgcaactcctattttagcaaacatcac 35367680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 380 - 626
Target Start/End: Complemental strand, 30626997 - 30626751
Alignment:
Q  380 agcaacggatcctatcatggaaactttgatttgatttcattcaacttagctataacatctttcatcagcattcgatgagcaggaaactcttcagaacatg 479  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| ||| ||||||||| ||  ||||||||||| |||||||    
T  30626997 agcaacggatcctagcatggaaacattgatttgatttcattcaactttgctataacatcttttatcggcattcgattagatggaaactcttctgaacatg 30626898  T
Q  480 caactccaattgcggcaaacatcaccaaacaactccaaatcttgtcttccacaatccctttttgatcttcagcaaatggcacgagcaaatgtgaatcgac 579  Q
    |||||||||||   ||||||||||| || ||| ||| |||||||| ||||||||||||| | | |||||||||||||||||  |||||||||||||| ||    
T  30626897 caactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggcaaaagcaaatgtgaatctac 30626798  T
Q  580 tatctcgaggattccttctggaattttcatcttacagaatgcatgta 626  Q
    |||||| | |||||| ||||||| |||||||||||||||||||||||    
T  30626797 tatctcaaagattccatctggaactttcatcttacagaatgcatgta 30626751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 380 - 602
Target Start/End: Complemental strand, 30663923 - 30663701
Alignment:
Q  380 agcaacggatcctatcatggaaactttgatttgatttcattcaacttagctataacatctttcatcagcattcgatgagcaggaaactcttcagaacatg 479  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||| |||||||||||||| ||| ||||||||| ||  |||||||||||||||||||    
T  30663923 agcaacggatcctcgcatggaaacattgatttgatttcattcaactttgctataacatcttttatcggcattcgataagatggaaactcttcagaacatg 30663824  T
Q  480 caactccaattgcggcaaacatcaccaaacaactccaaatcttgtcttccacaatccctttttgatcttcagcaaatggcacgagcaaatgtgaatcgac 579  Q
    |||||||||||   ||||||||||| || ||| ||| |||||||| ||||||||||||| | | |||||||||||||||||  |||||||||||||| ||    
T  30663823 caactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggcaaaagcaaatgtgaatctac 30663724  T
Q  580 tatctcgaggattccttctggaa 602  Q
    |||||| | |||||| |||||||    
T  30663723 tatctcaaagattccatctggaa 30663701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 380 - 602
Target Start/End: Complemental strand, 30672603 - 30672381
Alignment:
Q  380 agcaacggatcctatcatggaaactttgatttgatttcattcaacttagctataacatctttcatcagcattcgatgagcaggaaactcttcagaacatg 479  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||| |||||||||||||| ||| ||||||||| ||  |||||||||||||||||||    
T  30672603 agcaacggatcctcgcatggaaacattgatttgatttcattcaactttgctataacatcttttatcggcattcgataagatggaaactcttcagaacatg 30672504  T
Q  480 caactccaattgcggcaaacatcaccaaacaactccaaatcttgtcttccacaatccctttttgatcttcagcaaatggcacgagcaaatgtgaatcgac 579  Q
    |||||||||||   ||||||||||| || ||| ||| |||||||| ||||||||||||| | | |||||||||||||||||  |||||||||||||| ||    
T  30672503 caactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggcaaaagcaaatgtgaatctac 30672404  T
Q  580 tatctcgaggattccttctggaa 602  Q
    |||||| | |||||| |||||||    
T  30672403 tatctcaaagattccatctggaa 30672381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 30664111 - 30663974
Alignment:
Q  162 gttttcataaactgaaattattttacttgcatctcaactaacaaaatttccaaacaataccatgtatttaatgcaactgactacaaatacaaattattat 261  Q
    ||||||||||||  ||||| | |||||||||| | |||||||||  |||| ||||||||| ||||||||||||||  |||||| |||||||||| ||| |    
T  30664111 gttttcataaaccaaaattgtattacttgcatataaactaacaatttttcgaaacaatactatgtatttaatgcatttgactagaaatacaaatcatttt 30664012  T
Q  262 ccccatacatagaaaataaaattcaaagtaatgcaaca 299  Q
    ||| ||||| ||||| |  | |||||||||||||||||    
T  30664011 cccaatacaaagaaattgtagttcaaagtaatgcaaca 30663974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 30672791 - 30672654
Alignment:
Q  162 gttttcataaactgaaattattttacttgcatctcaactaacaaaatttccaaacaataccatgtatttaatgcaactgactacaaatacaaattattat 261  Q
    ||||||||||||  ||||| | |||||||||| | |||||||||  |||| ||||||||| ||||||||||||||  |||||| |||||||||| ||| |    
T  30672791 gttttcataaaccaaaattgtattacttgcatataaactaacaatttttcgaaacaatactatgtatttaatgcatttgactagaaatacaaatcatttt 30672692  T
Q  262 ccccatacatagaaaataaaattcaaagtaatgcaaca 299  Q
    ||| ||||| ||||| |  | |||||||||||||||||    
T  30672691 cccaatacaaagaaattgtagttcaaagtaatgcaaca 30672654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 30627163 - 30627048
Alignment:
Q  184 ttacttgcatctcaactaacaaaatttccaaacaataccatgtatttaatgcaactgactacaaatacaaattattatccccatacatagaaaataaaat 283  Q
    |||||||||| | |||||||||  |||| ||||||||| ||||||||||||||  |||||| |||||||||| ||| |||| ||||| ||||| |  | |    
T  30627163 ttacttgcatataaactaacaatttttcgaaacaatactatgtatttaatgcatttgactagaaatacaaatcattttcccaatacaaagaaattgtagt 30627064  T
Q  284 tcaaagtaatgcaaca 299  Q
    ||||||||||||||||    
T  30627063 tcaaagtaatgcaaca 30627048  T

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Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 365 - 615
Target Start/End: Complemental strand, 1154644 - 1154394
Alignment:
Q  365 ttttcttatcaaagtagcaacggatcctatcatggaaactttgatttgatttcattcaacttagctataacatctttcatcagcattcgatgagcaggaa 464  Q
    ||||||||||| | |||||| || ||||| ||||||| ||||||||||||||||||||||||| | ||||||| ||| |||| |||||||||||||||||    
T  1154644 ttttcttatcacaatagcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcgatgagcaggaa 1154545  T
Q  465 actcttcagaacatgcaactccaattgcggcaaacatcaccaaacaactccaaatcttgtcttccacaatccctttttgatcttcagcaaatggcacgag 564  Q
    ||||||||| ||||||||||||||||   |||||||||||||||||  |   |||||||| |||||||||  || | ||||||||  |||| ||||  ||    
T  1154544 actcttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaatttctgtctgatcttcgacaaacggcataag 1154445  T
Q  565 caaatgtgaatcgactatctcgaggattccttctggaattttcatcttaca 615  Q
    |||| ||   ||||||||||| ||||||||||| | ||||||||| |||||    
T  1154444 caaacgttggtcgactatctcaaggattccttcagaaattttcattttaca 1154394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 422 - 626
Target Start/End: Original strand, 10414954 - 10415158
Alignment:
Q  422 aacttagctataacatctttcatcagcattcgatgagcaggaaactcttcagaacatgcaactccaattgcggcaaacatcaccaaacaactccaaatct 521  Q
    |||||| ||||||||||||| |||| ||||||||||| |||||  |||||||||||||||||||| |||||  ||||||||||||||||  ||  |||||    
T  10414954 aacttatctataacatcttttatcaacattcgatgagaaggaacttcttcagaacatgcaactccgattgcaccaaacatcaccaaacacttcttaatct 10415053  T
Q  522 tgtcttccacaatccctttttgatcttcagcaaatggcacgagcaaatgtgaatcgactatctcgaggattccttctggaattttcatcttacagaatgc 621  Q
    | | ||||||||||||  | | | |||| ||||||||||  || || |||||||| |||||||||||||||||||||||||||||||| || |||||| |    
T  10415054 tattttccacaatccccgtctcaacttcggcaaatggcaaaagtaattgtgaatctactatctcgaggattccttctggaattttcattttgcagaattc 10415153  T
Q  622 atgta 626  Q
    |||||    
T  10415154 atgta 10415158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 619
Target Start/End: Original strand, 10419960 - 10420037
Alignment:
Q  542 tgatcttcagcaaatggcacgagcaaatgtgaatcgactatctcgaggattccttctggaattttcatcttacagaat 619  Q
    ||||||| || ||||||||  |||||||||||||| |||||||| || ||| || | |||||||||||||||||||||    
T  10419960 tgatctttaggaaatggcataagcaaatgtgaatccactatctcaagaatttctacaggaattttcatcttacagaat 10420037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 616
Target Start/End: Complemental strand, 13565043 - 13564967
Alignment:
Q  540 tttgatcttcagcaaatggcacgagcaaatgtgaatcgactatctcgaggattccttctggaattttcatcttacag 616  Q
    |||||||||| | ||||||||  |||||| ||  ||| |||||| | ||||||||||||||||||||||||||||||    
T  13565043 tttgatcttccgtaaatggcataagcaaacgttgatccactatcgcaaggattccttctggaattttcatcttacag 13564967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 615
Target Start/End: Complemental strand, 15294487 - 15294450
Alignment:
Q  578 actatctcgaggattccttctggaattttcatcttaca 615  Q
    |||||||| || ||||||||||||||||||||||||||    
T  15294487 actatctcaagaattccttctggaattttcatcttaca 15294450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 615
Target Start/End: Complemental strand, 15474856 - 15474819
Alignment:
Q  578 actatctcgaggattccttctggaattttcatcttaca 615  Q
    |||||||| || ||||||||||||||||||||||||||    
T  15474856 actatctcaagaattccttctggaattttcatcttaca 15474819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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