View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_low_6 (Length: 401)
Name: NF3403_low_6
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 228 - 388
Target Start/End: Complemental strand, 42301251 - 42301088
Alignment:
| Q |
228 |
tagttgttttgttgataaatttggttgaaggaggaacctcgttgttaagcgaagaccttgagtttgctatgctgaattcaaatttgacatataaatcaga |
327 |
Q |
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| T |
42301251 |
tagttgttttgttgataaatttggttgaaggaggaaccttgttgttaagcgaagaccttgagtttgctatgttgaattcaaatttgacatataaatcaga |
42301152 |
T |
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| Q |
328 |
ttacctcagta---ataacataatcctttcttttaatggcttatccagtgttttcatatttgat |
388 |
Q |
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| T |
42301151 |
ttacctcagtaataataacataatcttttcttttaatggcttatccggtgttttcatatttgat |
42301088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 219 - 388
Target Start/End: Complemental strand, 42295437 - 42295269
Alignment:
| Q |
219 |
tgtctgcagtagttgttttgttgataaatttggttgaaggaggaacctcgttgttaagcgaagaccttgagtttgctatgctgaattcaaatttgacata |
318 |
Q |
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| T |
42295437 |
tgtctgcagtagttgttttgttgataaatttggttgaag-aggaaccttgttgttaagggaaaaccttgagtttgttatgttgaattcaaaattgacata |
42295339 |
T |
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| Q |
319 |
taaatcagattacctcagtaataacataatcctttcttttaatggcttatccagtgttttcatatttgat |
388 |
Q |
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| T |
42295338 |
taaatccgattacctcagtaataacataatcttttctgtcaatggcatatccggtgttttcatatatgat |
42295269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 42295543 - 42295476
Alignment:
| Q |
110 |
atccaagttgaaaatgaattgtat-attgttaagcatagaagtttatattatcattacatgttgatgt |
176 |
Q |
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| T |
42295543 |
atccaagttgaagatgaattgtattattgttaagcatagaagtttatattatcattagatgttgatgt |
42295476 |
T |
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