View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_low_7 (Length: 397)
Name: NF3403_low_7
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 48662615 - 48662980
Alignment:
| Q |
19 |
cttactagcttttgttaaatattttataggaagagcgcagacaaaaagctctatgaataagactatgattgcttagataaataggaaagttttatcttat |
118 |
Q |
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| T |
48662615 |
cttactagcttttgttaaatattttataggaagagcgcagacaaaaagctctatgaataagactatgattgcttagataaatcggaaagttttatcttat |
48662714 |
T |
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| Q |
119 |
ttgactagcttataacttataagtatgtttagatgtatttgatatcagagtttatctgagttgcttgtaacatttcttgataagatacttcaagtagctt |
218 |
Q |
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| T |
48662715 |
ttgactagcttataacttataagtatgtttagatgtatttgatatcagagtttatctgagttgcttgtaacatttcttgataagatacttcaagtagctt |
48662814 |
T |
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| Q |
219 |
ttaaacttatgacttactactagagtgaagactcattctagtccttacaaaactgagactcggtttggttcctcacaataaaaaatacaatttttagtcc |
318 |
Q |
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| T |
48662815 |
tgaaacttatgacttaccactagagtgaagattcattctagtccttaaaaaactgagactcggtttggttcctcacaataaaaaatacaacttttagtcc |
48662914 |
T |
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| Q |
319 |
ctcacaaccgagacactttagtccctaacaaaacctccataacaaattttgattctttttgctgat |
384 |
Q |
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| T |
48662915 |
ctcacaaccgagacactttagtccctaacaaaacctccataacaaattttgattctttttgctgat |
48662980 |
T |
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