View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3404-Insertion-2 (Length: 957)

Name: NF3404-Insertion-2
Description: NF3404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3404-Insertion-2
NF3404-Insertion-2
[»] chr7 (3 HSPs)
chr7 (8-739)||(44877999-44878730)
chr7 (732-918)||(44877790-44877976)
chr7 (13-96)||(44879608-44879691)
[»] chr6 (5 HSPs)
chr6 (230-478)||(28920539-28920796)
chr6 (486-550)||(28920893-28920957)
chr6 (648-688)||(28921105-28921145)
chr6 (648-688)||(28907936-28907976)
chr6 (767-801)||(28921670-28921704)
[»] chr4 (5 HSPs)
chr4 (230-478)||(42891222-42891479)
chr4 (486-577)||(42891576-42891666)
chr4 (648-688)||(42896633-42896673)
chr4 (648-687)||(42891788-42891827)
chr4 (767-801)||(42892353-42892387)
[»] chr8 (1 HSPs)
chr8 (46-98)||(29677386-29677438)
[»] chr1 (1 HSPs)
chr1 (46-98)||(26458584-26458636)


Alignment Details
Target: chr7 (Bit Score: 703; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 8 - 739
Target Start/End: Complemental strand, 44878730 - 44877999
Alignment:
Q  8 taggcaaaacgggatgaatgatggatgagatggaaaaattaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaacgaagnnnnnn 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  44878730 taggcaaaacgggatgaatgatggatgagatggaaaaattaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaacgaagaaaaaa 44878631  T
Q  108 ntggaacgagtgtagcagttgatgaactaagccatctactgggagtggtggtgagcaatataagcatatcaaagtaatgtaggaactaagattccgatca 207  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878630 atggaacgagtgtagcagttgatgaactaagccatctactgggagtggtggtgagcaatataagcatatcaaagtaatgtaggaactaagattccgatca 44878531  T
Q  208 gtgcagtgacagtgcttgcacatgatcaagtagctcgtgttgccaagatgttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878530 gtgcagtgacagtgcttgcacatgatcaagtagctcgtgttgccaagatgttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcga 44878431  T
Q  308 cagtctaagcttggtgcaatcgcttctgctcagcagaggcttaagctttataacaaggttcctccaaatgggcttgttttgtatactggcacaattgtga 407  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878430 cagtctaagcttggtgcaatcgcttctgctcaaaagaggcttaagctttataacaaggttcctccaaatgggcttgttttgtatactggcacaattgtga 44878331  T
Q  408 tggcaggagaaaaaggtgaccgttgatttggaaccatttagacctatcaatgtgtctctctatctttgtgataagtttcttgagtggtaatacaagagat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878330 tggcaggagaaaaaggtgaccgttgatttggaaccatttagacctatcaatgtgtctctctatctttgtgataagtttcttgagtggtaatacaagagat 44878231  T
Q  508 gtgcctcacaagtatagtgtggatcttcaaaagaaacatggaataaagagggcagtcagccctacgttttatttttctaaacatggaaaaagtatagtgt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878230 gtgcctcacaagtatagtgtggatcttcaaaagaaacatggaataaagagggcagtcagccctacgttttatttttctaaacatggaaaaagtatagtgt 44878131  T
Q  608 gaatatttgcatggaaaaatgtcataactatatgagaagactgctgatttcaaaactgagcttagtcagtcagatatgtttaaaagtcagatatgtttgg 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878130 gaatatttgcatggaaaaatgtcataactatatgagaagactgctgatttcaaaactgagcttagtcagtcagatatgtttaaaagtcagatatgtttgg 44878031  T
Q  708 ttccccgtttagagatcctgaaagctctgatg 739  Q
    ||||||||||||||||||||||||||||||||    
T  44878030 ttccccgtttagagatcctgaaagctctgatg 44877999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 732 - 918
Target Start/End: Complemental strand, 44877976 - 44877790
Alignment:
Q  732 ctctgatggagtagtttgcaaatgaatacagacggtgatgtgagaacatttgatgatttttctgatgatgtatagttatgaatatccttctaaacatatc 831  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44877976 ctctgttggagtagtttgcaaatgaatacagacggtgatgtgagaacatttgatgatttttctgatgatgtatagttatgaatatccttctaaacatatc 44877877  T
Q  832 tatccatgtacttccaagtgcgaatgaacaggattaaataggataaaagtttgnnnnnnnncttatattttgggacaaagaaaataa 918  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||||    
T  44877876 tatccatgtacttccaagtgcgaatgaacaagattaaataggataaaagtttaatttttttcttatattttgggacaaagaaaataa 44877790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 44879608 - 44879691
Alignment:
Q  13 aaaacgggatgaatgatggatgagatggaaaaattaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaa 96  Q
    |||| ||||||||||||| | |||||  ||| |||||||| |||| ||||| | ||||||||||||||  ||||||||||||||    
T  44879608 aaaaagggatgaatgatgaacgagataaaaatattaaaagaaccaaattaatggaaaagaaaacatatcataaggttcattaaa 44879691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 1e-65; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 230 - 478
Target Start/End: Original strand, 28920539 - 28920796
Alignment:
Q  230 tgatcaagtagctcgtgttgccaagatg-ttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcgacagtctaagcttggtgcaatc 328  Q
    ||||||| | ||||||||| | |||||| |||| |||||||||||||||||||||||||| || |||| ||   |||||||||||  |||||||||||||    
T  28920539 tgatcaaattgctcgtgttactaagatgcttggcgatgagtttggaactgcttcaaacatcaagagtagggtgaatcgacagtctgtgcttggtgcaatc 28920638  T
Q  329 gcttctgctcagcagaggcttaagctttataacaaggttcctccaaatgggcttgttttgtatactggcacaattg-------tgatgg-caggagaaaa 420  Q
     ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||       ||||||  |||||||||    
T  28920639 acttctgctcagcagaggcttaagctttataacaaggtccctccaaacgggcttgttttgtatactggtacaattgtgactgatgatggtaaggagaaaa 28920738  T
Q  421 aggtgaccgttgatttggaaccatttagacctatcaatgtgtctctctatctttgtga 478  Q
    |||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  28920739 aggtgaccattgattttgaaccatttagacctatcaacgcgtctctctatctttgtga 28920796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 486 - 550
Target Start/End: Original strand, 28920893 - 28920957
Alignment:
Q  486 cttgagtggtaatacaagagatgtgcctcacaagtatagtgtggatcttcaaaagaaacatggaa 550  Q
    ||||||||||||||||||||| |||| ||||||||  ||||| ||||||| ||||||||||||||    
T  28920893 cttgagtggtaatacaagagaggtgcttcacaagttcagtgtcgatcttccaaagaaacatggaa 28920957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 648 - 688
Target Start/End: Original strand, 28921105 - 28921145
Alignment:
Q  648 ctgctgatttcaaaactgagcttagtcagtcagatatgttt 688  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28921105 ctgctgatttcaaaactgagcttagtcagtcagatatgttt 28921145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 648 - 688
Target Start/End: Original strand, 28907936 - 28907976
Alignment:
Q  648 ctgctgatttcaaaactgagcttagtcagtcagatatgttt 688  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  28907936 ctgctgatttcaaaactgagcttagcaagtcagatatgttt 28907976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 767 - 801
Target Start/End: Original strand, 28921670 - 28921704
Alignment:
Q  767 tgatgtgagaacatttgatgatttttctgatgatg 801  Q
    |||| ||||||||||||||||||||||||||||||    
T  28921670 tgatatgagaacatttgatgatttttctgatgatg 28921704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 2e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 230 - 478
Target Start/End: Original strand, 42891222 - 42891479
Alignment:
Q  230 tgatcaagtagctcgtgttgccaagatg-ttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcgacagtctaagcttggtgcaatc 328  Q
    ||||||| || |||||||| |||||||| |||   |||||| |||||||||||||||||| ||||||| ||   |||||||||||  |||||||||||||    
T  42891222 tgatcaaatatctcgtgttaccaagatgcttgccaatgagtatggaactgcttcaaacatcaaaagtagggtgaatcgacagtctgtgcttggtgcaatc 42891321  T
Q  329 gcttctgctcagcagaggcttaagctttataacaaggttcctccaaatgggcttgttttgtatactggcacaattgtga-tg-------gcaggagaaaa 420  Q
      |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| ||       | |||||||||    
T  42891322 agttctgcccagcagaggcttaagctttataacaaggttcctccaaatgggcttgttttgtattgtggcacaattttgactgatgatgagaaggagaaaa 42891421  T
Q  421 aggtgaccgttgatttggaaccatttagacctatcaatgtgtctctctatctttgtga 478  Q
    ||| |||| ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  42891422 aggagacctttgattttgaaccatttagacctatcaatgcgtctctctatctttgtga 42891479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 486 - 577
Target Start/End: Original strand, 42891576 - 42891666
Alignment:
Q  486 cttgagtggtaatacaagagatgtgcctcacaagtatagtgtggatcttcaaaagaaacatggaataaagagggcagtcagccctacgtttt 577  Q
    |||||||||||||||||| || |||| |||||||||||  |||||||||| ||| ||||||||||  | ||||||| |||||||||||||||    
T  42891576 cttgagtggtaatacaagggaggtgcttcacaagtataccgtggatcttccaaaaaaacatggaa-gaggagggcaatcagccctacgtttt 42891666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 648 - 688
Target Start/End: Original strand, 42896633 - 42896673
Alignment:
Q  648 ctgctgatttcaaaactgagcttagtcagtcagatatgttt 688  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42896633 ctgctgatttcaaaactgagcttagtcagtcagatatgttt 42896673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 687
Target Start/End: Original strand, 42891788 - 42891827
Alignment:
Q  648 ctgctgatttcaaaactgagcttagtcagtcagatatgtt 687  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  42891788 ctgctgatttcaaaactgagcttagtaagtcagatatgtt 42891827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 767 - 801
Target Start/End: Original strand, 42892353 - 42892387
Alignment:
Q  767 tgatgtgagaacatttgatgatttttctgatgatg 801  Q
    |||| ||||||||||||||||||||||||||||||    
T  42892353 tgatatgagaacatttgatgatttttctgatgatg 42892387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 29677438 - 29677386
Alignment:
Q  46 ttaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaacg 98  Q
    ||||||||| |||||||| ||||||||||||| || |||||| ||||||||||    
T  29677438 ttaaaaggatcagattaatgcaaaagaaaacagatcttaaggctcattaaacg 29677386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 26458636 - 26458584
Alignment:
Q  46 ttaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaacg 98  Q
    ||||||||| |||||||| ||||||||||||| || |||||| ||||||||||    
T  26458636 ttaaaaggatcagattaatgcaaaagaaaacagatcttaaggctcattaaacg 26458584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University