View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3404-Insertion-3 (Length: 702)
Name: NF3404-Insertion-3
Description: NF3404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3404-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 388
Target Start/End: Complemental strand, 3634641 - 3634258
Alignment:
| Q |
7 |
acctggaaccccatctagataaaaagtggccaatgtataaataagtgatgagaaaagaagatgaagaatgaaattttggttcttgagatagcacactctt |
106 |
Q |
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| T |
3634641 |
acctggaaccccatctagataaaaagtggccaatgtataaataagtgatgagaaaagaagatgaagaatgaaattttggttcttgagatagcacactctt |
3634542 |
T |
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| Q |
107 |
tctcaaaacttctttttcatccattttatcatatgaacaagagtgtcctaacccttactagtattgactatttagtatcacaatacaatggtgttatacc |
206 |
Q |
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| T |
3634541 |
tctcaaaacttctttttcatacattttatcatatgaacaagagtgtcctaacccttactagtattgactatttagtatcacaatacaatggtgttatatc |
3634442 |
T |
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| Q |
207 |
atcataag--ttcataataatcaagcacaagaatcatgcaatttgtgtcattaaaatgaccgatgacgtgtcaatatattaatgacttcaatataacact |
304 |
Q |
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| T |
3634441 |
atcataagttttcataataatcaagcacaagaatcatgcaatttgtgtcattaaaatgaccgatgacgtgtcaatatattgatgacttcaatataacact |
3634342 |
T |
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| Q |
305 |
actctcgctcattgatatttctgatttaaaacgtgtctagtatccgacacatgtcatgtctgacaccgacacatgtgattacac |
388 |
Q |
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| T |
3634341 |
actctcactcatcgatatttctgattcaaaacgtgtctagtatccgacacatgtcatgtctaacaccaacacgtgtgattacac |
3634258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 469 - 702
Target Start/End: Complemental strand, 3634183 - 3633949
Alignment:
| Q |
469 |
gtaatgtttgatgctttgagattttctaaaatactaaagtttt-gagacaaaagaggatcaaaagtataggaattgagggaataatataaaacgggtgat |
567 |
Q |
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| T |
3634183 |
gtaatgtttgatgctttgagattttctaaaatactaaagtttttgagacaaaagaggatcaaaagtataggaattgagggaataatataaaacgggtgat |
3634084 |
T |
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| Q |
568 |
tgaaagtgacagttactcaaagctattnnnnnnnggtttagctaactaattgctggaatcttagatttgatgtgcatttgtagccacgtaacaattgaat |
667 |
Q |
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| T |
3634083 |
tgaaagtgacagttactcaaagctattaaaaaaaggtttagctaactaattgctggaatcttagatttgatgtgcatttgtagccacgtaacaattgaat |
3633984 |
T |
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| Q |
668 |
aatgccaacaacaaatgtttcagtgttgacactca |
702 |
Q |
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| T |
3633983 |
aatgccaacaacaaatgtttcagtgttgacactca |
3633949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 3644513 - 3644465
Alignment:
| Q |
7 |
acctggaaccccatctagataaaaagtggccaatgtataaataagtgat |
55 |
Q |
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| T |
3644513 |
acctggaaccccatctagctaaaaagtgaccaaagtataaataagtgat |
3644465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 5835327 - 5835280
Alignment:
| Q |
344 |
gtatccgacacatgtcatgtctgacaccgacacatgtgattacactga |
391 |
Q |
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||||| ||||||||||||||||||||||||||||| | |||||||||| |
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| T |
5835327 |
gtatcagacacatgtcatgtctgacaccgacacatataattacactga |
5835280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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