View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3404-Insertion-4 (Length: 701)

Name: NF3404-Insertion-4
Description: NF3404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3404-Insertion-4
NF3404-Insertion-4
[»] scaffold0041 (4 HSPs)
scaffold0041 (8-595)||(95527-96114)
scaffold0041 (8-595)||(87511-88106)
scaffold0041 (596-665)||(87405-87474)
scaffold0041 (596-646)||(95440-95490)
[»] chr7 (4 HSPs)
chr7 (8-595)||(40870168-40870755)
chr7 (8-595)||(40878177-40878772)
chr7 (596-665)||(40878809-40878878)
chr7 (596-646)||(40870792-40870842)
[»] chr2 (1 HSPs)
chr2 (303-392)||(40352688-40352777)
[»] chr1 (2 HSPs)
chr1 (297-376)||(28346744-28346823)
chr1 (321-391)||(42730140-42730210)
[»] chr4 (1 HSPs)
chr4 (338-392)||(21715642-21715696)


Alignment Details
Target: scaffold0041 (Bit Score: 564; Significance: 0; HSPs: 4)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 8 - 595
Target Start/End: Complemental strand, 96114 - 95527
Alignment:
Q  8 taaggtggcgcaggacaaattccaattccactaccatatttccaccctgacgactccaacattatttcgccttttttccctccgaattccaacacgtagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  96114 taaggtggcgcaggacaaattccaattccactaccatatttccaccctgacgactccaacattatttcgccttttttccctccaaattccaacacgtagt 96015  T
Q  108 tcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  96014 tcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtcactgacaaatggactccatccagttgtcaataaatgcctcttcg 95915  T
Q  208 gcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgagg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  95914 gcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgagg 95815  T
Q  308 aaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatccttt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95814 aaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatccttt 95715  T
Q  408 gtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtct 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95714 gtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtct 95615  T
Q  508 catgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca 595  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95614 catgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca 95527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 595
Target Start/End: Complemental strand, 88106 - 87511
Alignment:
Q  8 taaggtggcgcaggacaaattccaattccactaccatatttccaccctgac--------gactccaacattatttcgccttttttccctccgaattccaa 99  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||  |||||||||||||||    
T  88106 taaggtggtgcagcacaaattccaattccactaccagatttccaccctgacaaaggatcgactccaacattatttcgccttttagccctccgaattccaa 88007  T
Q  100 cacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtcactgagtaatggactccatccagttgtcaacaaatg 199  Q
    || | || |||||||||||||||||||||||||| |  ||||||||||| |||||||||||||| ||||  || ||||||||||||||||||||||||||    
T  88006 catgaagatcgccgttttcagatctcaaaaacacaatcgaatccccagacgcaagtttcttgtcgctgacaaaaggactccatccagttgtcaacaaatg 87907  T
Q  200 cctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtcc 299  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||  |||||| |||||||||| |||||||||||    
T  87906 cctcttcggcgtgcccctataaacgtgcctgaaatgccacttttcgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtcc 87807  T
Q  300 atacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtt 399  Q
    | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87806 aaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtt 87707  T
Q  400 tatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87706 tatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttc 87607  T
Q  500 atcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca 595  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||    
T  87606 atcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcaca 87511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 596 - 665
Target Start/End: Complemental strand, 87474 - 87405
Alignment:
Q  596 ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc 665  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  87474 ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc 87405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 596 - 646
Target Start/End: Complemental strand, 95490 - 95440
Alignment:
Q  596 ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca 646  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95490 ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca 95440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 564; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 8 - 595
Target Start/End: Original strand, 40870168 - 40870755
Alignment:
Q  8 taaggtggcgcaggacaaattccaattccactaccatatttccaccctgacgactccaacattatttcgccttttttccctccgaattccaacacgtagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40870168 taaggtggcgcaggacaaattccaattccactaccatatttccaccctgacgactccaacattatttcgccttttttccctccaaattccaacacgtagt 40870267  T
Q  108 tcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  40870268 tcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtcactgacaaatggactccatccagttgtcaataaatgcctcttcg 40870367  T
Q  208 gcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgagg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40870368 gcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgagg 40870467  T
Q  308 aaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatccttt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870468 aaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatccttt 40870567  T
Q  408 gtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtct 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870568 gtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtct 40870667  T
Q  508 catgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca 595  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870668 catgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca 40870755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 595
Target Start/End: Original strand, 40878177 - 40878772
Alignment:
Q  8 taaggtggcgcaggacaaattccaattccactaccatatttccaccctgac--------gactccaacattatttcgccttttttccctccgaattccaa 99  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||  |||||||||||||||    
T  40878177 taaggtggtgcagcacaaattccaattccactaccagatttccaccctgacaaaggatcgactccaacattatttcgccttttagccctccgaattccaa 40878276  T
Q  100 cacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtcactgagtaatggactccatccagttgtcaacaaatg 199  Q
    || | || |||||||||||||||||||||||||| |  ||||||||||| |||||||||||||| ||||  || ||||||||||||||||||||||||||    
T  40878277 catgaagatcgccgttttcagatctcaaaaacacaatcgaatccccagacgcaagtttcttgtcgctgacaaaaggactccatccagttgtcaacaaatg 40878376  T
Q  200 cctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtcc 299  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||  |||||| |||||||||| |||||||||||    
T  40878377 cctcttcggcgtgcccctataaacgtgcctgaaatgccacttttcgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtcc 40878476  T
Q  300 atacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtt 399  Q
    | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878477 aaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtt 40878576  T
Q  400 tatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878577 tatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttc 40878676  T
Q  500 atcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca 595  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||    
T  40878677 atcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcaca 40878772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 596 - 665
Target Start/End: Original strand, 40878809 - 40878878
Alignment:
Q  596 ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc 665  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  40878809 ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc 40878878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 40870792 - 40870842
Alignment:
Q  596 ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca 646  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870792 ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca 40870842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 392
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
Q  303 cgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat 392  Q
    |||||||||||| |||| ||||| |||||||||  ||| || || |||||||||||||||||||| |||||||| || || |||||||||    
T  40352688 cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat 40352777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 28346823 - 28346744
Alignment:
Q  297 tccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaa 376  Q
    |||| |||||| |||||| | || |||||||| ||||||  |||||| || ||||||||||| ||||||||||| |||||    
T  28346823 tccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattgagtcaa 28346744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 42730210 - 42730140
Alignment:
Q  321 gcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga 391  Q
    ||||| |||||||||  |||||| || ||||| |||||||||||||||||||| || || || ||||||||    
T  42730210 gcacagtatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaaaaga 42730140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
Q  338 agaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat 392  Q
    |||||| || ||||||||||||||||||||||| ||||| || || |||||||||    
T  21715696 agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat 21715642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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