View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3404-Insertion-5 (Length: 351)
Name: NF3404-Insertion-5
Description: NF3404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3404-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 55 - 252
Target Start/End: Original strand, 46872179 - 46872376
Alignment:
| Q |
55 |
tatttacctagatttatcatttgtcttgctttattgggaagctgctgcctgctggagttttgttttgacatagtggtgggtggtccccaactaaaaaacc |
154 |
Q |
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| T |
46872179 |
tatttacctagatttatcatttgtcttgctttattgggaagctgctgcctgctggagttttgttttgacatagtggtgggtggtccccaactaaaaaacc |
46872278 |
T |
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| Q |
155 |
ttaaaccttgtcacttcctcactatatatatgccatcacattttcttgaccaaaccctgaaaacaataaccaaacctttgatcatctcatccatcgtg |
252 |
Q |
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| T |
46872279 |
ttaaaccttgtcacttcctcactatatatatgccatcatattttcttgaccaaaccctgaaaacaataaccaaacctttgatcatctcatccatcgtg |
46872376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 46889596 - 46889703
Alignment:
| Q |
145 |
ctaaaaaaccttaaaccttgtcacttcctcactatatatatgcca-tcacattttcttgaccaaaccctgaaaacaataaccaaacctttgatcatctca |
243 |
Q |
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| T |
46889596 |
ctaaaaaaccttaaaccttgccacttcctcactatatatatgcttgtctcattta-tcgaccaaaccctgaaaacaataaccaaacctttgatcatccca |
46889694 |
T |
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| Q |
244 |
tccatcgtg |
252 |
Q |
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| T |
46889695 |
tccatcgtg |
46889703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 46872442 - 46872475
Alignment:
| Q |
318 |
tattgattatttgattaacatttcaactaattgc |
351 |
Q |
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| T |
46872442 |
tattgattatttgattaacatttcaactaattgc |
46872475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 46889765 - 46889798
Alignment:
| Q |
318 |
tattgattatttgattaacatttcaactaattgc |
351 |
Q |
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| T |
46889765 |
tattgattatttgattaacatttcaactaattgc |
46889798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 46863182 - 46863220
Alignment:
| Q |
140 |
cccaactaaaaaaccttaaaccttgtcacttcctcacta |
178 |
Q |
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| T |
46863182 |
cccaactaaaaaaccttaaacctcgtcactgcctcacta |
46863220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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