View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3404-Insertion-7 (Length: 247)

Name: NF3404-Insertion-7
Description: NF3404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3404-Insertion-7
NF3404-Insertion-7
[»] chr1 (5 HSPs)
chr1 (8-247)||(27986603-27986842)
chr1 (32-247)||(26459351-26459564)
chr1 (32-247)||(27997820-27998034)
chr1 (32-245)||(27996065-27996277)
chr1 (33-247)||(27988428-27988641)
[»] chr8 (1 HSPs)
chr8 (39-247)||(29678142-29678347)
[»] chr2 (1 HSPs)
chr2 (32-247)||(11491074-11491286)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 27986603 - 27986842
Alignment:
Q  8 tattactcctttaattgnnnnnnnaattgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttctt 107  Q
    |||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27986603 tattactcctttaattgtttttttaattgcatctgacatattcgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttctt 27986702  T
Q  108 ttgtgaaaaaagatttcaagttaacgtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatctt 207  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||| |||||||||||||||||    
T  27986703 ttgtgaaaaaagattccaagttaacgtccttggaattcttaagaaccataaaacagatatggaaactgtttccgacaaattctgtttggaagatgatctt 27986802  T
Q  208 gagtttgattatcttctgctgccatctattgctatagagg 247  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27986803 gagtttgattatcttctgctgccatctattgctatagagg 27986842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 26459351 - 26459564
Alignment:
Q  32 aattgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaa 131  Q
    |||||||||| |||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||    
T  26459351 aattgcatct-acatattcacaagtgttgagaaaaagtcaaaacaattatggtttgttttcattttccaggttcttttgtgtaaaa-gattccaagttaa 26459448  T
Q  132 cgtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgcca 231  Q
     |||||||||||||||| |||||||||||| |||||||||||||   ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  26459449 tgtccttggaattcttatgaaccataaaacagatatggaaactgtttccgacaagttctgtttggaagatgatcttgagtttgattatcttctgctgcca 26459548  T
Q  232 tctattgctatagagg 247  Q
    ||||||||||||||||    
T  26459549 tctattgctatagagg 26459564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 27998034 - 27997820
Alignment:
Q  32 aattgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaa 131  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |||| ||||||||    
T  27998034 aattgcatctcacatattcgcaagcgttgagaaaaagtcaaaacaattatggtctgttttcattttccaagttcttttgtgcaaaa-gattccaagttaa 27997936  T
Q  132 cgtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgcca 231  Q
     |||||||||||||||| |||||||||||| |||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  27997935 tgtccttggaattcttatgaaccataaaacagatatggaaactgtttccgacaaattctgtttggaagatgatcttgagtttgattatcttctgttgcca 27997836  T
Q  232 tctattgctatagagg 247  Q
    ||||||| | ||||||    
T  27997835 tctattgttgtagagg 27997820  T

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Target: chr1; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 32 - 245
Target Start/End: Original strand, 27996065 - 27996277
Alignment:
Q  32 aattgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaa 131  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||| |||| |||| ||||||||    
T  27996065 aattgcatctaacatattcgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcatttctcaggttcttttgtgcaaaa-gattccaagttaa 27996163  T
Q  132 cgtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgcca 231  Q
     |||||||||||||||| |||||||||||| |||||| ||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27996164 tgtccttggaattcttatgaaccataaaacagatatgtaaactgtttccgacaaattctgtttggaagatgatcttgagtttgattatcttctgctgcca 27996263  T
Q  232 tctattgctataga 245  Q
    | ||||||||||||    
T  27996264 tttattgctataga 27996277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 27988641 - 27988428
Alignment:
Q  33 attgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaac 132  Q
    |||||||||||||||||   ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||||||||     
T  27988641 attgcatctgacatattcaaaagagttgagaaaaagtcaaaacaattatcgtttgttttcattttccacgttcttttgtgcaaaa-gattccaagttaat 27988543  T
Q  133 gtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgccat 232  Q
    |||||||||||||||  |||||||||||| |||||||||||||   ||||||||||| ||| ||||||||||||||| |||||| ||||| || || |||    
T  27988542 gtccttggaattcttttgaaccataaaacagatatggaaactgtttccgacaaattctgttcggaagatgatcttgaatttgatcatcttttgttgtcat 27988443  T
Q  233 ctattgctatagagg 247  Q
    |||||||||||||||    
T  27988442 ctattgctatagagg 27988428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 247
Target Start/End: Original strand, 29678142 - 29678347
Alignment:
Q  39 tctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaacgtcctt 138  Q
    ||||||||||| ||||| |||| ||||| ||||| ||||||||||||||||| ||||||||| ||||||||||| |||| |||| |||||||| ||||||    
T  29678142 tctgacatattcgcaagtgttgggaaaa-gtcaatacaattatggtttgttt-cattttccaggttcttttgtgtaaaa-gattccaagttaatgtcctt 29678238  T
Q  139 ggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgccatctattg 238  Q
    |||||||||| ||||||||||||||| | ||||||||   ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  29678239 ggaattcttatgaaccataaaacggacaaggaaactgattccggcaaattctgtttggaagatgatcttgagattgattatcttctgctgccatctattg 29678338  T
Q  239 ctatagagg 247  Q
    |||||||||    
T  29678339 ctatagagg 29678347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 11491286 - 11491074
Alignment:
Q  32 aattgcatctgacatatttgcaagcgttgagaaaaagtcaaaacaattatggtttgttttcattttccacgttcttttgtgaaaaaagatttcaagttaa 131  Q
    ||||| ||| |||||||||||||| |||| ||||| ||||| ||||||||| ||||||||| ||||||| ||||||||||| |||| |||| |||||||     
T  11491286 aattgtatcagacatatttgcaagtgttgggaaaa-gtcaatacaattatgatttgttttc-ttttccaggttcttttgtgtaaaa-gattccaagttag 11491190  T
Q  132 cgtccttggaattcttaagaaccataaaacggatatggaaactggaaccgacaaattcagtttggaagatgatcttgagtttgattatcttctgctgcca 231  Q
      ||||||||||||||| |||   ||||| |||||  |||| |    | || |||| |  | ||||||||||||||||| | ||||||||||||||||||    
T  11491189 tatccttggaattcttatgaattctaaaatggataaagaaagtttttctgaaaaatactctctggaagatgatcttgagatagattatcttctgctgcca 11491090  T
Q  232 tctattgctatagagg 247  Q
    ||||||||||||||||    
T  11491089 tctattgctatagagg 11491074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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