View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3404R-Insertion-1 (Length: 837)

Name: NF3404R-Insertion-1
Description: NF3404R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3404R-Insertion-1
NF3404R-Insertion-1
[»] chr4 (28 HSPs)
chr4 (9-466)||(46871389-46871856)
chr4 (712-835)||(46871014-46871135)
chr4 (494-575)||(46871305-46871385)
chr4 (87-225)||(17381414-17381552)
chr4 (120-219)||(9297461-9297560)
chr4 (135-218)||(12034560-12034642)
chr4 (98-197)||(50384489-50384588)
chr4 (161-284)||(13834370-13834495)
chr4 (15-176)||(40836784-40836953)
chr4 (88-225)||(11839872-11840009)
chr4 (136-295)||(46804930-46805090)
chr4 (609-651)||(46871201-46871243)
chr4 (454-578)||(19328826-19328950)
chr4 (99-225)||(24806610-24806732)
chr4 (161-225)||(47097421-47097485)
chr4 (161-212)||(51150957-51151008)
chr4 (161-212)||(56095137-56095188)
chr4 (167-278)||(46805802-46805915)
chr4 (15-72)||(24806728-24806785)
chr4 (453-578)||(43159860-43159984)
chr4 (88-200)||(48973268-48973380)
chr4 (161-212)||(3534161-3534212)
chr4 (161-212)||(45615722-45615773)
chr4 (99-212)||(20177516-20177627)
chr4 (369-427)||(46889312-46889370)
chr4 (454-491)||(8871648-8871685)
chr4 (167-212)||(30889151-30889196)
chr4 (477-514)||(55090866-55090903)
[»] chr3 (13 HSPs)
chr3 (88-218)||(14984517-14984647)
chr3 (15-200)||(26499849-26500041)
chr3 (453-575)||(29247320-29247440)
chr3 (88-217)||(51889888-51890017)
chr3 (120-212)||(50271510-50271602)
chr3 (455-578)||(36545128-36545250)
chr3 (98-200)||(3941674-3941776)
chr3 (98-200)||(43908729-43908831)
chr3 (161-279)||(34979114-34979234)
chr3 (15-79)||(43838814-43838879)
chr3 (100-212)||(40954429-40954541)
chr3 (455-578)||(36563064-36563186)
chr3 (449-491)||(23771608-23771650)
[»] chr1 (16 HSPs)
chr1 (105-222)||(6541111-6541228)
chr1 (455-578)||(19940548-19940670)
chr1 (87-254)||(32743194-32743361)
chr1 (456-573)||(1408629-1408745)
chr1 (98-200)||(38267286-38267388)
chr1 (160-219)||(21379425-21379484)
chr1 (158-212)||(8069071-8069125)
chr1 (152-201)||(7151941-7151990)
chr1 (517-578)||(43456661-43456722)
chr1 (167-282)||(9890566-9890682)
chr1 (88-212)||(36144915-36145039)
chr1 (98-197)||(26515202-26515301)
chr1 (96-198)||(19464354-19464456)
chr1 (98-144)||(30050441-30050487)
chr1 (120-225)||(5043392-5043497)
chr1 (147-204)||(35621480-35621537)
[»] chr7 (13 HSPs)
chr7 (99-204)||(32996362-32996466)
chr7 (117-200)||(26905113-26905196)
chr7 (117-200)||(39608444-39608527)
chr7 (88-210)||(3116914-3117036)
chr7 (455-578)||(37720503-37720625)
chr7 (161-256)||(10228773-10228868)
chr7 (531-578)||(15972159-15972206)
chr7 (87-212)||(12927690-12927815)
chr7 (460-492)||(7833850-7833882)
chr7 (482-578)||(28710367-28710462)
chr7 (165-212)||(8062808-8062855)
chr7 (98-176)||(12849578-12849655)
chr7 (533-578)||(47903911-47903956)
[»] chr2 (14 HSPs)
chr2 (87-210)||(13242534-13242657)
chr2 (88-225)||(15301452-15301589)
chr2 (98-200)||(19206377-19206479)
chr2 (161-225)||(7165668-7165732)
chr2 (479-578)||(6983154-6983251)
chr2 (139-212)||(15816892-15816965)
chr2 (161-210)||(17742581-17742630)
chr2 (99-212)||(30256177-30256290)
chr2 (491-575)||(3037421-3037504)
chr2 (158-218)||(6788331-6788391)
chr2 (531-578)||(1991934-1991981)
chr2 (165-212)||(20966132-20966179)
chr2 (531-578)||(25627406-25627453)
chr2 (98-252)||(33260988-33261142)
[»] chr6 (9 HSPs)
chr6 (88-225)||(24285079-24285216)
chr6 (98-284)||(10067595-10067784)
chr6 (98-225)||(21020974-21021095)
chr6 (99-201)||(515854-515956)
chr6 (158-211)||(33806851-33806904)
chr6 (161-225)||(25085023-25085087)
chr6 (158-212)||(9436675-9436729)
chr6 (121-199)||(23887621-23887699)
chr6 (88-200)||(33550949-33551062)
[»] chr8 (10 HSPs)
chr8 (98-200)||(2987008-2987110)
chr8 (98-225)||(4493050-4493177)
chr8 (89-218)||(33508548-33508677)
chr8 (161-212)||(3662433-3662484)
chr8 (488-574)||(27415238-27415323)
chr8 (479-578)||(15111844-15111943)
chr8 (518-578)||(40995834-40995893)
chr8 (161-212)||(41303087-41303138)
chr8 (87-212)||(3714857-3714980)
chr8 (14-72)||(7604155-7604215)
[»] chr5 (11 HSPs)
chr5 (100-225)||(8206170-8206295)
chr5 (453-578)||(36603642-36603767)
chr5 (100-201)||(34795348-34795449)
chr5 (100-212)||(26675121-26675232)
chr5 (100-212)||(26946729-26946840)
chr5 (98-225)||(27001220-27001347)
chr5 (183-278)||(917118-917215)
chr5 (161-225)||(11534904-11534968)
chr5 (163-225)||(6217582-6217645)
chr5 (161-212)||(11497964-11498015)
chr5 (485-578)||(24233181-24233274)
[»] scaffold0086 (1 HSPs)
scaffold0086 (120-206)||(21715-21801)
[»] scaffold0009 (1 HSPs)
scaffold0009 (455-574)||(106441-106558)
[»] scaffold0687 (1 HSPs)
scaffold0687 (14-72)||(1839-1899)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 466
Target Start/End: Complemental strand, 46871856 - 46871389
Alignment:
Q  9 tgtattttaatgtattaaaattttataatagtctttattgtgtattttattagtcaaaatagtcattgacgcta------ttcctaatactctcgataac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||      ||||||||||||| ||||||    
T  46871856 tgtattttaatgtattaaaattttataatagtctttattgtgtactttattagtcaaaatagtcattgacgctaaaataattcctaatactctggataac 46871757  T
Q  103 tcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatatta-------aaggtctaatatgaaaat 195  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |       ||||||||||||||||||    
T  46871756 tcttttcatatggagactgaaataacaacaaataagtacttaaaaagactaataagacaataagtaagtatataatatattgaaggtctaatatgaaaat 46871657  T
Q  196 attaacaaaatattttattgtcaaagactactgtcaccaacgaactgtacaatcaaagacttttaaaatttcaatatattgagagactaatctgactact 295  Q
    |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46871656 attaacaaaatattttattgtcaaagactactttcaccaacaaagtgtacaatcaaagacttttaaaatttcaatatattgagagactaatctgactact 46871557  T
Q  296 actcgttgcacattcaatgatcgaaaatactattaccccgttaactcaacacacttttaacacaaatacaatattaacaaggatattattattgattggt 395  Q
       |||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46871556 ---cgttacacattcaatgatcgaaatgactattaccccgttaactcaacacacttttaacacaaatacaatattaacaaggatattattattgattggt 46871460  T
Q  396 gccaacccaacatgagtaaatttatccaccatcataagaaccgaccaatattatttgatgggtcatgttaa 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46871459 gccaacccaacatgagtaaatttatccaccatcataagaaccgaccaatattatttgatgggtcatgttaa 46871389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 712 - 835
Target Start/End: Complemental strand, 46871135 - 46871014
Alignment:
Q  712 atatagaggatagttttttaaacacaaaaattgggttgtaccaatgaccaccgtaactaaataaactac-aaaatatatttgggttaaccacttttttac 810  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  46871135 atatagaggatagttttt-aaacacaaaaattgggttgtaccaaagaccagcgtaactaaataaactacaaaaatatattt-ggttaaccacttttttac 46871038  T
Q  811 tacttcccttcgtccttgttaatta 835  Q
    ||||| ||||||||| | |||||||    
T  46871037 tactt-ccttcgtcccttttaatta 46871014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 494 - 575
Target Start/End: Complemental strand, 46871385 - 46871305
Alignment:
Q  494 aaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgacaacacaagtttcaatgtaata 575  Q
    |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46871385 aaactaaaaaagaaaactttaaggtgaaagtaacac-tttttatattttcgaggagttgacaacacaagtttcaatgtaata 46871305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 17381414 - 17381552
Alignment:
Q  87 taatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaa 186  Q
    |||||||| | |||||||||||  |||||| ||| ||||||||| |||||||||| || || |||||| | ||||||||||||||||||| |||| ||||    
T  17381414 taatactcacaataactcttttgatatagaaactaaaatgacaataaataagtacgtataaggactaacatgataataagtaagtatattgaaggactaa 17381513  T
Q  187 tatgaaaatattaacaaaatattttattgtcaaagacta 225  Q
    ||||| ||||||||| |||||||||| | |||| |||||    
T  17381514 tatgacaatattaacgaaatattttaatatcaaggacta 17381552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 9297560 - 9297461
Alignment:
Q  120 tgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaa 219  Q
    ||||||||||| ||| ||||| ||| || |||| ||| |||||||| |||||||||| || | ||||||||| |||||||||||| ||||||| ||||||    
T  9297560 tgaaatgacaataaagaagtatttataaggactgatatgataataaataagtatatttaatgactaatatgacaatattaacaaagtattttaatgtcaa 9297461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 12034560 - 12034642
Alignment:
Q  135 taagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtca 218  Q
    |||||||||| ||||||| ||| |||||||| |||||||||| |||  |||||| ||||||||| |||||||||||||||||||    
T  12034560 taagtacttataaagactgatatgataataaataagtatattgaaga-ctaataagaaaatatttacaaaatattttattgtca 12034642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 50384489 - 50384588
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||||||||||  |||||||||||||||||||| |||||| |||||| || || | ||| ||||||||||||||||||| || | | ||||||| |||||    
T  50384489 ataactctttttatatagagactgaaatgacaataaataaatacttataaggattgatatgataataagtaagtatattgaaagacgaatatgacaatat 50384588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 284
Target Start/End: Complemental strand, 13834495 - 13834370
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaaagactactgtcaccaacgaactgtacaatcaaagac--ttt 258  Q
    |||||||||||||||| |||| ||||||||| |||||||||||| ||||||| ||| |||||||| | | || ||| || || |||||||| |||  |||    
T  13834495 aataagtaagtatattgaaggactaatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatcaaggactattt 13834396  T
Q  259 taaaatttcaatatattgagagacta 284  Q
    ||||||||  ||| |||||| |||||    
T  13834395 taaaattttgataaattgagggacta 13834370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 40836953 - 40836784
Alignment:
Q  15 ttaatgtattaaaattttataatagtcttt-attgtgtattttattagtcaaaatagtcattgacgct------at-tcctaatactctcgataactctt 106  Q
    ||||||||||||||||||| ||||||| || ||||||||   | |||||||||||||||  |||||||      || |  ||||||| || |||||||||    
T  40836953 ttaatgtattaaaattttaaaatagtcattgattgtgtaccgtgttagtcaaaatagtctctgacgcttaaacaatattttaatactttcaataactctt 40836854  T
Q  107 ttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatatt 176  Q
    ||| ||||| |||||||||||||| || |||||| ||| || |||| ||| |||||||||||||| ||||    
T  40836853 ttcatatagggactgaaatgacaataagtaagtatttataaggactgatatgataataagtaagtgtatt 40836784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 11840009 - 11839872
Alignment:
Q  88 aatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaat 187  Q
    ||||||| | |||| ||||||  ||||| |||||||||||||| ||  |||||||   || |||| ||| || ||||||||||| |||| |||| |||||    
T  11840009 aatactcacaataattctttttatatagggactgaaatgacaataagcaagtactggtaaggacttatatgacaataagtaagtgtattgaaggactaat 11839910  T
Q  188 atgaaaatattaacaaaatattttattgtcaaagacta 225  Q
    |||| ||||||||| || ||||||| |||||| |||||    
T  11839909 atgacaatattaacgaagtattttaatgtcaaggacta 11839872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 46804930 - 46805090
Alignment:
Q  136 aagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaaagactactgtcaccaa 235  Q
    ||||||||| || |||||||| |||| |||||||||||||| |||  || | |||| ||||||||  |||||||||| | |||  ||||| | | |||||    
T  46804930 aagtacttataaggactaatacgatattaagtaagtatattgaagaactgacatgataatattaatgaaatattttaatatcagggactattttgaccaa 46805029  T
Q  236 cgaactgtacaatcaaagac--ttttaaaatttcaatatattgagagactaatctgactact 295  Q
    ||||  | ||||||| ||||  ||||||||||| |||||||||| |||||| | ||||||||    
T  46805030 cgaa-ggcacaatcagagacaattttaaaattttaatatattgaaagactattatgactact 46805090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 651
Target Start/End: Complemental strand, 46871243 - 46871201
Alignment:
Q  609 aatactatatgaacacatcaaatagacaatatttgatgacgca 651  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  46871243 aatactatatgaacacatcaattagacaatatttgatgacgca 46871201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 578
Target Start/End: Complemental strand, 19328950 - 19328826
Alignment:
Q  454 tgggtcatgttaaccaatgccccgagggcattggttaaggaaact-ataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttg 552  Q
    |||||||||||||||  ||||||| ||||| |||||||||||||| | ||||  ||  ||| |  |||||||||||| |||||||| ||| || ||||||    
T  19328950 tgggtcatgttaaccggtgccccgggggcactggttaaggaaactaaaaaaatgaagttttaaaatgaaagtaacac-tttttatacttttgaagagttg 19328852  T
Q  553 acaacacaagtttcaatgtaatactt 578  Q
    | | |||||||| |||||||||||||    
T  19328851 atagcacaagttccaatgtaatactt 19328826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 24806610 - 24806732
Alignment:
Q  99 taactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatt 198  Q
    ||||||||||| |||| |||||||||||||||    ||||||| || || || ||||| || |||||||||||||||| ||   ||| ||||| ||||||    
T  24806610 taactcttttcatataaagactgaaatgacaa----taagtacatataaggaataatatgacaataagtaagtatattgaaaaactactatgacaatatt 24806705  T
Q  199 aacaaaatattttattgtcaaagacta 225  Q
    |||||| ||||||| ||| | ||||||    
T  24806706 aacaaattattttaatgttagagacta 24806732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 47097421 - 47097485
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaaagacta 225  Q
    ||||| ||||||||||||||| ||||||||| |||||||| ||| ||||||| ||| ||||||||    
T  47097421 aataaataagtatattaaaggactaatatgacaatattaataaagtattttagtgttaaagacta 47097485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 51151008 - 51150957
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    |||||||||||||||| |||  ||||||||| ||||||||||||||||||||    
T  51151008 aataagtaagtatattgaagtactaatatgacaatattaacaaaatatttta 51150957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 56095188 - 56095137
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    ||||||||||||||||||| | ||||||||| |||||||||||| |||||||    
T  56095188 aataagtaagtatattaaaagactaatatgacaatattaacaaattatttta 56095137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 46805915 - 46805802
Alignment:
Q  167 taagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaaagactactgtcaccaacgaactgtacaatcaaagact--tttaaaat 264  Q
    |||||||||| |||  || |||||| || ||||||||||||||||| ||||||| | || | | || |||||| ||||||||||| ||||  ||||||||    
T  46805915 taagtatattgaagtactgatatgataacattaacaaaatattttaatgtcaaatattattttgactaacgaagtgtacaatcaatgactactttaaaat 46805816  T
Q  265 ttcaatatattgag 278  Q
    || |||| ||||||    
T  46805815 tttaatacattgag 46805802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 24806785 - 24806728
Alignment:
Q  15 ttaatgtattaaaattttataatagtctttattgtgtattttattagtcaaaatagtc 72  Q
    |||||||||| |||||| | ||||||| ||||| ||||||| ||||||||||||||||    
T  24806785 ttaatgtattgaaatttgaaaatagtccttattatgtatttcattagtcaaaatagtc 24806728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 578
Target Start/End: Complemental strand, 43159984 - 43159860
Alignment:
Q  453 atgggtcatgttaaccaatgccccgagggcattggttaaggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttg 552  Q
    ||||||||||||||||  || | |  ||||||||||||| ||| ||| ||||  ||| ||| |  ||||| |||||| ||||||  |||| |||||||||    
T  43159984 atgggtcatgttaaccggtgtctccggggcattggttaaagaacctaaaaaaagaaattttaaaatgaaaataacac-tttttaagtttttgaggagttg 43159886  T
Q  553 acaacacaagtttcaatgtaatactt 578  Q
    |||||||||||| ||||| |||||||    
T  43159885 acaacacaagttccaatgcaatactt 43159860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 48973268 - 48973380
Alignment:
Q  88 aatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaat 187  Q
    ||||||| | |||||||||| | ||||  |||| ||||| ||| || |||||| ||| || |||  ||| || |||||||||||||||| |||| |||||    
T  48973268 aatactcacaataactctttgcatataaggactaaaatgccaataagtaagtatttataaggaccgatatgacaataagtaagtatattgaaggactaat 48973367  T
Q  188 atgaaaatattaa 200  Q
    |||| ||||||||    
T  48973368 atgacaatattaa 48973380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 3534161 - 3534212
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    |||| |||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  3534161 aatatgtaagtatattaaaggactaatataaaaatattaatgaaatatttta 3534212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 45615722 - 45615773
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    |||||||||||||||| |||| |||| |||| |||||||||||| |||||||    
T  45615722 aataagtaagtatattgaaggactaaaatgacaatattaacaaattatttta 45615773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 20177627 - 20177516
Alignment:
Q  99 taactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatt 198  Q
    ||||||||||| |||  ||||| | ||||||  || || ||||||| ||| ||| ||  ||||||||||||||||||| |||  || |||||| ||||||    
T  20177627 taactcttttcttatcaagactaatatgacactaagtaggtacttataaaaacttatgtgataataagtaagtatatttaag--ctgatatgacaatatt 20177530  T
Q  199 aacaaaatatttta 212  Q
    ||| ||||||||||    
T  20177529 aacgaaatatttta 20177516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 46889370 - 46889312
Alignment:
Q  369 ttaacaaggatattattattgattggtgccaacccaacatgagtaaatttatccaccat 427  Q
    |||| |||| || |||||||||||||||||||| ||||||||||| | ||||| |||||    
T  46889370 ttaataagggtaatattattgattggtgccaactcaacatgagtagagttatctaccat 46889312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 8871685 - 8871648
Alignment:
Q  454 tgggtcatgttaaccaatgccccgagggcattggttaa 491  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  8871685 tgggtcatgttaaccattgccccgagggcactggttaa 8871648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 30889151 - 30889196
Alignment:
Q  167 taagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    |||||||||| |||| || |||||||| ||||||||||||||||||    
T  30889151 taagtatattgaaggactgatatgaaagtattaacaaaatatttta 30889196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 514
Target Start/End: Complemental strand, 55090903 - 55090866
Alignment:
Q  477 gagggcattggttaaggaaactataaaagaaaactttg 514  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  55090903 gagggcattggttaaggaaactataaatgaaaaatttg 55090866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 6e-27; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 14984647 - 14984517
Alignment:
Q  88 aatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaat 187  Q
    ||||||| | |||||||||||| ||||| ||||| |||||||| |||||||||||||||| |||| ||| || |||||| ||||||||| ||||  ||||    
T  14984647 aatactcacaataactcttttcatatagggactggaatgacaataaataagtacttaaaaggactcatatgacaataagcaagtatattgaaggattaat 14984548  T
Q  188 atgaaaatattaacaaaatattttattgtca 218  Q
    |||| ||||||||| |||||||||| |||||    
T  14984547 atgacaatattaacgaaatattttaatgtca 14984517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 26500041 - 26499849
Alignment:
Q  15 ttaatgtattaaaattttataatagtcttta-ttgtgtattttattagtcaaaatagtcattgacgcta-------ttcctaatactctcgataactctt 106  Q
    ||||||||||||||||||| || ||||| || || || | | | ||||||||||||||| |||||||||       |||  ||||||| | |||||||||    
T  26500041 ttaatgtattaaaattttaaaaaagtctataattatgcactcttttagtcaaaatagtccttgacgctaaaataatttctcaatactcaccataactctt 26499942  T
Q  107 ttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaa 200  Q
    ||  ||||| ||||||||||| || || |||||||||| || |||| ||| |||||||| |||||||||| || | || |||||||||||||||    
T  26499941 tta-tatagggactgaaatgataataagtaagtacttagaaggactgatatgataataaataagtatattgaatgactgatatgaaaatattaa 26499849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 575
Target Start/End: Complemental strand, 29247440 - 29247320
Alignment:
Q  453 atgggtcatgttaaccaatgccccgagggcattggttaaggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttg 552  Q
    ||||||||||||||||| ||||||| | ||| | ||| ||||||||| ||||| ||| ||| | || ||| |||||| |||||||| ||| |||||||||    
T  29247440 atgggtcatgttaaccagtgccccg-gagcactagttgaggaaactaaaaaagtaaattttaaagttaaaataacac-tttttatacttttgaggagttg 29247343  T
Q  553 acaacacaagtttcaatgtaata 575  Q
    | |||||||||| ||||||||||    
T  29247342 ataacacaagttccaatgtaata 29247320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 51889888 - 51890017
Alignment:
Q  88 aatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaat 187  Q
    ||||||| | |||||||||||| ||||| ||||||||| |||| |  ||| ||| |  || |||| |||  |||||||||| |||||||||||| |||||    
T  51889888 aatactcacaataactcttttcatatagggactgaaataacaataggtaaatacatgtaaggactgatacaataataagtatgtatattaaaggactaat 51889987  T
Q  188 atgaaaatattaacaaaatattttattgtc 217  Q
    | || | |||||||||| ||||||| ||||    
T  51889988 aagacactattaacaaagtattttaatgtc 51890017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 50271602 - 50271510
Alignment:
Q  120 tgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    |||||||| || || ||||||| || || |||||||||||| ||||||||||||||| |||  || ||| || ||||||||| ||||||||||    
T  50271602 tgaaatgataataagtaagtacatataaggactaataagatgataagtaagtatattgaagaactgataagacaatattaaccaaatatttta 50271510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 455 - 578
Target Start/End: Original strand, 36545128 - 36545250
Alignment:
Q  455 gggtcatgttaaccaatgccccgagggcattggttaaggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgac 554  Q
    ||||| ||||||||  ||||||  ||||| ||||||| ||||||| ||| ||||| ||| | |||||| |||||| |||||||  ||| |||||||||||    
T  36545128 gggtcttgttaaccggtgcccccggggcactggttaaagaaactaaaaaggaaaattttaaagtgaaaataacac-tttttatgcttttgaggagttgac 36545226  T
Q  555 aacacaagtttcaatgtaatactt 578  Q
    | |||||||| ||||  |||||||    
T  36545227 atcacaagttacaatacaatactt 36545250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 3941776 - 3941674
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||||||||||| |||| ||||| | |||| || || ||||||  || || |||| ||| ||||||||||| ||||||| |||| ||||||||| |||||    
T  3941776 ataactcttttcatataaagactaacatgataataagtaagtatatataacgactgatatgataataagtaggtatattgaaggactaatatgacaatat 3941677  T
Q  198 taa 200  Q
    |||    
T  3941676 taa 3941674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 43908831 - 43908729
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||||||||||| ||||   | ||||||||||| ||||||||||||| ||||||| ||| |||||||  ||| |||||| |  | ||||||||| |||||    
T  43908831 ataactcttttcatataagtattgaaatgacaataaataagtacttataaagactgatatgataatatataaatatattgattgactaatatgataatat 43908732  T
Q  198 taa 200  Q
    |||    
T  43908731 taa 43908729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 34979114 - 34979234
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaaagactactgtcaccaacgaactgtacaatcaaagac--ttt 258  Q
    |||||||||||||||| || | ||||||||| ||||||||| |||||||||| ||| | |||||| | | || ||| || || ||||| ||| ||  |||    
T  34979114 aataagtaagtatattgaatgactaatatgataatattaacgaaatattttaatgtgagagactattttgactaacaaaatgcacaattaaaaactattt 34979213  T
Q  259 taaaatttcaatatattgaga 279  Q
    ||||||||| ||||| |||||    
T  34979214 taaaatttcgatatagtgaga 34979234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 43838879 - 43838814
Alignment:
Q  15 ttaatgtattaaaattttataatagtcttt-attgtgtattttattagtcaaaatagtcattgacg 79  Q
    ||||||||| ||||||||| ||||||| || |||||| ||||| ||||||||||||||| ||||||    
T  43838879 ttaatgtatcaaaattttaaaatagtcattgattgtgcattttgttagtcaaaatagtctttgacg 43838814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 40954429 - 40954541
Alignment:
Q  100 aactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatta 199  Q
    |||||||||| |||| ||| | ||||||||| || ||| |||| | || || ||||| || |||||||||||||||| ||   ||||||||| |||||||    
T  40954429 aactcttttcatataaagattaaaatgacaataagtaactactcataaggattaatatgacaataagtaagtatattgaaacactaatatgacaatatta 40954528  T
Q  200 acaaaatatttta 212  Q
    | ||| |||||||    
T  40954529 aaaaattatttta 40954541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 578
Target Start/End: Complemental strand, 36563186 - 36563064
Alignment:
Q  455 gggtcatgttaaccaatgccccgagggcattggttaaggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgac 554  Q
    ||||| ||||||||  ||||||  ||||| ||||||| ||||||| ||| ||||  ||| | |||||| |||||| |||||||  ||| |||||||||||    
T  36563186 gggtcttgttaaccggtgcccccggggcactggttaaagaaactaaaaaggaaagttttaaagtgaaaataacac-tttttatgcttttgaggagttgac 36563088  T
Q  555 aacacaagtttcaatgtaatactt 578  Q
    | |||||||| ||||  |||||||    
T  36563087 atcacaagttacaatacaatactt 36563064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 449 - 491
Target Start/End: Complemental strand, 23771650 - 23771608
Alignment:
Q  449 tttgatgggtcatgttaaccaatgccccgagggcattggttaa 491  Q
    |||||||||| |||||||||||||||||  |||||||||||||    
T  23771650 tttgatgggtaatgttaaccaatgcccccggggcattggttaa 23771608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 6541228 - 6541111
Alignment:
Q  105 ttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaacaaa 204  Q
    ||||| ||||| |||||||||||||| || |||||| ||| ||||||| ||| || |||||||||||||||| |||| ||||||||| ||||||||| ||    
T  6541228 ttttcatatagtgactgaaatgacaataagtaagtatttataaagactgatatgacaataagtaagtatattgaaggactaatatgacaatattaacgaa 6541129  T
Q  205 atattttattgtcaaaga 222  Q
    |||||||| |||||||||    
T  6541128 atattttaatgtcaaaga 6541111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 455 - 578
Target Start/End: Original strand, 19940548 - 19940670
Alignment:
Q  455 gggtcatgttaaccaatgccccgagggcattggttaaggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgac 554  Q
    ||||||||||||||  ||||||  ||||| ||||||||||||||| ||| ||||  ||| | |||||| |||||| |||||||  ||| |||||||||||    
T  19940548 gggtcatgttaaccggtgcccccggggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacac-tttttatgcttttgaggagttgac 19940646  T
Q  555 aacacaagtttcaatgtaatactt 578  Q
    | || ||||||||||| |||||||    
T  19940647 agcataagtttcaatgcaatactt 19940670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 254
Target Start/End: Original strand, 32743194 - 32743361
Alignment:
Q  87 taatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaa 186  Q
    |||||||| | |||||||||||  |||||  ||| ||||||||| || ||||||| ||  |||||| ||| || | |||||||||||||| || |  |||    
T  32743194 taatactcccaataactcttttgatataggtactaaaatgacaataagtaagtacgtatcaagactgatatgacagtaagtaagtatattgaatgattaa 32743293  T
Q  187 tatgaaaatattaacaaaatattttattgtcaaagactactgtcaccaacgaactgtacaatcaaaga 254  Q
    ||| | ||||||| | |||||||||| ||||| ||| || | | || |||||| ||||||||||||||    
T  32743294 tataagaatattagcgaaatattttaatgtcagagattattttgactaacgaaatgtacaatcaaaga 32743361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 456 - 573
Target Start/End: Complemental strand, 1408745 - 1408629
Alignment:
Q  456 ggtcatgttaaccaatgccccgagggcattggttaaggaaactataaaa-gaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgac 554  Q
    |||||||||||||||||||| | | ||||||||||||||||||| |||| ||||  ||| |  ||||| ||| || ||||||| |||| || ||||||||    
T  1408745 ggtcatgttaaccaatgccctg-gtgcattggttaaggaaactaaaaaaagaaagttttaaaatgaaaataaaac-tttttatgtttttgaagagttgac 1408648  T
Q  555 aacacaagtttcaatgtaa 573  Q
    |||||||||| ||||||||    
T  1408647 aacacaagttccaatgtaa 1408629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 38267286 - 38267388
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||||||||||| ||||  |||| ||||||||| || |||||||||| || |||| ||| || ||||||||| |||||| ||||  |||||||| |||||    
T  38267286 ataactcttttcatataatgactaaaatgacaataagtaagtacttataaggactgatacgacaataagtaaatatattgaaggattaatatgacaatat 38267385  T
Q  198 taa 200  Q
    |||    
T  38267386 taa 38267388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 21379425 - 21379484
Alignment:
Q  160 taataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaa 219  Q
    ||||||||||||||||| |||| ||| ||||| |||||||||||| ||||||| ||||||    
T  21379425 taataagtaagtatattcaaggactagtatgataatattaacaaattattttaatgtcaa 21379484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 8069071 - 8069125
Alignment:
Q  158 gataataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    ||||||||||||||||||| | ||  |||||||| ||||||||||||||||||||    
T  8069071 gataataagtaagtatattgatggattaatatgacaatattaacaaaatatttta 8069125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 7151990 - 7151941
Alignment:
Q  152 taataagataataagtaagtatattaaaggtctaatatgaaaatattaac 201  Q
    ||||| |||||||||||||||||||||| | ||||||||| |||||||||    
T  7151990 taatatgataataagtaagtatattaaaagactaatatgacaatattaac 7151941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 578
Target Start/End: Complemental strand, 43456722 - 43456661
Alignment:
Q  517 gtgaaagtaacacatttttatattttcgaggagttgacaacacaagtttcaatgtaatactt 578  Q
    |||||| |||||||||||||| |||| ||||| |||||||  ||| ||||||||||||||||    
T  43456722 gtgaaaataacacatttttatgtttttgaggaattgacaatgcaaatttcaatgtaatactt 43456661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 9890682 - 9890566
Alignment:
Q  167 taagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaaagactactgtcaccaacgaactgtacaatcaaagac-ttttaaaatt 265  Q
    |||||||||| |||| ||||||||| ||||||||| || |||| || ||| || || || | | || |||||| |||||||||||||||  |||||||||    
T  9890682 taagtatattgaaggactaatatgacaatattaacgaagtattctaatgttaaggattattttgactaacgaaatgtacaatcaaagacaatttaaaatt 9890583  T
Q  266 tcaatatattgagagac 282  Q
    | |||| ||||| ||||    
T  9890582 ttaatacattgaaagac 9890566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 36144915 - 36145039
Alignment:
Q  88 aatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaat 187  Q
    ||||||| | |||||||||||  |||| | ||| ||||| ||| ||| ||||||||| || |||| ||| || ||||| |||||||||| ||   |||||    
T  36144915 aatactcacaataactcttttaatataaaaactaaaatgccaataaacaagtacttataaggactgatatgacaataactaagtatattgaaaaactaat 36145014  T
Q  188 atgaaaatattaacaaaatatttta 212  Q
    |||| |||||||| |||| ||||||    
T  36145015 atgacaatattaataaaagatttta 36145039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 26515301 - 26515202
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||||||||||| ||||   |||||||||||||| | |||||||||| ||||| | |||  | ||||| |||||||||  |||| ||||||||| |||||    
T  26515301 ataactcttttcatatatgaactgaaatgacaacgagtaagtacttataaagattgatataacaataattaagtatatcgaaggactaatatgacaatat 26515202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 19464354 - 19464456
Alignment:
Q  96 cgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaat 195  Q
    |||||||||||||| ||||| |||||||||||||   | ||||||  || ||| |||| || |||||||| |||||||||| || |  |||||||| |||    
T  19464354 cgataactcttttcatatagggactgaaatgacagtcagtaagtatctataaaaactattatgataataaataagtatattgaatgattaatatgacaat 19464453  T
Q  196 att 198  Q
    |||    
T  19464454 att 19464456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 30050441 - 30050487
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtactta 144  Q
    |||||||||||| |||| ||||| ||||||||| |||||||||||||    
T  30050441 ataactcttttcatatatagactaaaatgacaataaataagtactta 30050487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 5043392 - 5043497
Alignment:
Q  120 tgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaa 219  Q
    |||||| |||| ||| | ||| ||| ||| ||| ||| || ||||| |||||||||| || | | ||||| | |||||||||||||||||||| ||||||    
T  5043392 tgaaataacaataaacacgtatttataaaaactgatatgacaataaataagtatattgaatgaccaatataacaatattaacaaaatattttaatgtcaa 5043491  T
Q  220 agacta 225  Q
    | ||||    
T  5043492 acacta 5043497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 35621480 - 35621537
Alignment:
Q  147 aagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaacaaa 204  Q
    |||||| ||| || ||||||||||||||||||||| ||||||||| |  |||||||||    
T  35621480 aagactgatatgaaaataagtaagtatattaaaggactaatatgacagaattaacaaa 35621537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 32996466 - 32996362
Alignment:
Q  99 taactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatt 198  Q
    ||||||||||| ||||  |||||||||||||| ||||| ||||||| || |||||||| |||||||| |||||||||| |||| ||||||||| ||||||    
T  32996466 taactcttttcatatatggactgaaatgacaataaata-gtacttataaggactaatatgataataaataagtatattgaaggactaatatgacaatatt 32996368  T
Q  199 aacaaa 204  Q
    ||||||    
T  32996367 aacaaa 32996362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 26905113 - 26905196
Alignment:
Q  117 gactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaa 200  Q
    |||||||||||||| ||||||||||||| || |||||||| || |||||||||||||||| ||||  |||||||| ||||||||    
T  26905113 gactgaaatgacaataaataagtacttacaaggactaatatgacaataagtaagtatattgaaggaataatatgataatattaa 26905196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 39608527 - 39608444
Alignment:
Q  117 gactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaa 200  Q
    |||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||| | || | ||||||||| ||||||||    
T  39608527 gactgaaatgacaataaataagtaattataaagactaatacgataataagtaagtatactgaatgactaatatgacaatattaa 39608444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 3117036 - 3116914
Alignment:
Q  88 aatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaat 187  Q
    ||||||| | |||||||||| | ||||| |||| |||||| || ||| ||||||||| ||||||| |||  |||||||||||||||||| || | |||||    
T  3117036 aatactcacaataactctttacatatagggacttaaatgataataaacaagtacttataaagactgatataataataagtaagtatattgaaagactaat 3116937  T
Q  188 atgaaaatattaacaaaatattt 210  Q
    |||| ||||||||  ||||||||    
T  3116936 atgacaatattaatgaaatattt 3116914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 455 - 578
Target Start/End: Original strand, 37720503 - 37720625
Alignment:
Q  455 gggtcatgttaaccaatgccccgagggcattggttaaggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgac 554  Q
    ||||| |||||||| ||||||| |||||| ||||||||||||||| ||| ||||  ||| | |||||| |||||| |||||||  ||| |||||||||||    
T  37720503 gggtcttgttaaccgatgcccccagggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacac-tttttatgcttttgaggagttgac 37720601  T
Q  555 aacacaagtttcaatgtaatactt 578  Q
    | |||| ||| ||||| |||||||    
T  37720602 agcacatgttccaatgcaatactt 37720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 10228868 - 10228773
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaaagactactgtcaccaacgaactgtacaatcaaagact 256  Q
    ||||| |||||||||| |||| |||||||| |||| ||||||||| ||||||  ||||||||||| | | || |||||| || |||||||||||||    
T  10228868 aataattaagtatattgaaggactaatatgtaaattttaacaaaacattttaaggtcaaagactattttgactaacgaattgcacaatcaaagact 10228773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 531 - 578
Target Start/End: Original strand, 15972159 - 15972206
Alignment:
Q  531 tttttatattttcgaggagttgacaacacaagtttcaatgtaatactt 578  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  15972159 tttttatatttttgaggatttgacaacacaagtttcaatgtaatactt 15972206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 12927815 - 12927690
Alignment:
Q  87 taatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaa 186  Q
    |||||||| | |||||| ||||  ||||| |||| ||||||||  || ||||||| || || ||| |||| || ||||| ||||| |||| |||  ||||    
T  12927815 taatactcacaataactattttgatatagggactaaaatgacagtaagtaagtacgtataaggacaaatatgacaataactaagtctattgaagaactaa 12927716  T
Q  187 tatgaaaatattaacaaaatatttta 212  Q
     |||| ||||||||||||||||||||    
T  12927715 catgacaatattaacaaaatatttta 12927690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 7833882 - 7833850
Alignment:
Q  460 atgttaaccaatgccccgagggcattggttaag 492  Q
    |||||||||||||||||||||||||||||||||    
T  7833882 atgttaaccaatgccccgagggcattggttaag 7833850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 482 - 578
Target Start/End: Original strand, 28710367 - 28710462
Alignment:
Q  482 cattggttaaggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgacaacacaagtttcaatgtaatactt 578  Q
    |||||||||| ||||||| ||||||||  ||| | |||||| ||||| |||||||| |||| ||||||||  || ||||| || |||||||||||||    
T  28710367 cattggttaaagaaactaaaaaagaaagttttaaagtgaaaataaca-atttttatgtttttgaggagttagcagcacaaattccaatgtaatactt 28710462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 8062855 - 8062808
Alignment:
Q  165 agtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    ||||||||||||||| | ||||||||| |||||||||||| |||||||    
T  8062855 agtaagtatattaaaagactaatatgacaatattaacaaattatttta 8062808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 12849655 - 12849578
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatatt 176  Q
    |||||||||||| ||||  |||||||||||||| ||| |||||||| | |||||| |||  | ||||||||||||||||    
T  12849655 ataactcttttcatatatggactgaaatgacaataaacaagtactt-ataagacttatataacaataagtaagtatatt 12849578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 578
Target Start/End: Original strand, 47903911 - 47903956
Alignment:
Q  533 tttatattttcgaggagttgacaacacaagtttcaatgtaatactt 578  Q
    ||||| |||| |||||||||||||||||| || |||||||||||||    
T  47903911 tttatgtttttgaggagttgacaacacaaattccaatgtaatactt 47903956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 13242657 - 13242534
Alignment:
Q  87 taatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaa 186  Q
    |||||||| | |||||||||||| ||||  |||||||||||||| ||||||||||||| || || | ||| || |||||||||  |||||||||| ||||    
T  13242657 taatactcacaataactcttttcatataatgactgaaatgacaataaataagtacttataaggattgatatgacaataagtaaccatattaaaggactaa 13242558  T
Q  187 tatgaaaatattaacaaaatattt 210  Q
    ||||| ||||||||| || |||||    
T  13242557 tatgacaatattaacgaagtattt 13242534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 15301452 - 15301589
Alignment:
Q  88 aatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaat 187  Q
    ||||||| | |||||| ||||| ||||| |||||||||||  | || | ||||| || || |||| ||| ||||||||||||||||||| |||  |||||    
T  15301452 aatactcacaataacttttttcatatagggactgaaatgatgataagtgagtacatataaggactcatatgataataagtaagtatattgaagtactaat 15301551  T
Q  188 atgaaaatattaacaaaatattttattgtcaaagacta 225  Q
    | || ||||||||| || ||||||| ||||| ||||||    
T  15301552 aagacaatattaacgaagtattttaatgtcagagacta 15301589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 19206377 - 19206479
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||||||||||| |||||||||||||||||||| |  |||||||||| ||  |||  || || ||||||||| |||||| |||| |||||| || |||||    
T  19206377 ataactcttttcatatagagactgaaatgacaatatgtaagtacttataagaactgctatgacaataagtaaatatattgaaggactaataagacaatat 19206476  T
Q  198 taa 200  Q
    |||    
T  19206477 taa 19206479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 7165732 - 7165668
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaaagacta 225  Q
    |||||||||||||||| || | |||||||||||||||||||||| ||||||| ||| || |||||    
T  7165732 aataagtaagtatattgaaagactaatatgaaaatattaacaaattattttaatgttaaggacta 7165668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 479 - 578
Target Start/End: Original strand, 6983154 - 6983251
Alignment:
Q  479 gggcattggttaaggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgacaacacaagtttcaatgtaatactt 578  Q
    ||||| ||||||||||||||| ||||| ||| ||| | |||||| |||||| |||||||  |||  ||||||||||| |||||||| |||||||||||||    
T  6983154 gggcactggttaaggaaactaaaaaaggaaa-tttaaagtgaaaataacac-tttttatgctttttaggagttgacaccacaagttccaatgtaatactt 6983251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 15816965 - 15816892
Alignment:
Q  139 tacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    |||||| ||| ||| ||| || ||||||||||||| || |||| ||||||||| |||||||||||| |||||||    
T  15816965 tacttataaaaactgatatgaaaataagtaagtatcttgaaggactaatatgacaatattaacaaagtatttta 15816892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 17742581 - 17742630
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattt 210  Q
    ||||||||||||||||||| | ||||||||| |||||||||||| |||||    
T  17742581 aataagtaagtatattaaaagactaatatgacaatattaacaaattattt 17742630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 30256177 - 30256290
Alignment:
Q  99 taactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatt 198  Q
    ||||||| ||| ||||| || ||| || |||| || ||||||| || || | || ||| |||||||| |||||||||| |  | ||||||||| ||||||    
T  30256177 taactctattcatatagggattgatataacaataactaagtacatacaaggtctgatatgataataaataagtatattgagtgactaatatgacaatatt 30256276  T
Q  199 aacaaaatatttta 212  Q
    ||||||||||||||    
T  30256277 aacaaaatatttta 30256290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 575
Target Start/End: Complemental strand, 3037504 - 3037421
Alignment:
Q  491 aggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgacaacacaagtttcaatgtaata 575  Q
    ||||||||| ||||||||| ||| |  | |||||||||| |||||||| |||  ||||||||||||||||| || ||||||||||    
T  3037504 aggaaactaaaaaagaaaattttaaaatcaaagtaacac-tttttatacttttaaggagttgacaacacaaattccaatgtaata 3037421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 6788391 - 6788331
Alignment:
Q  158 gataataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtca 218  Q
    ||||||||||||||||||| || | ||| ||||| |||||||||||| ||||||| |||||    
T  6788391 gataataagtaagtatattgaatgactagtatgacaatattaacaaattattttaatgtca 6788331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 578
Target Start/End: Original strand, 1991934 - 1991981
Alignment:
Q  531 tttttatattttcgaggagttgacaacacaagtttcaatgtaatactt 578  Q
    ||||||| |||| |||||||||||||||||||||  ||||||||||||    
T  1991934 tttttatgtttttgaggagttgacaacacaagttctaatgtaatactt 1991981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 20966132 - 20966179
Alignment:
Q  165 agtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    ||||||||||||||| | ||||||||| |||||||||||| |||||||    
T  20966132 agtaagtatattaaaagactaatatgacaatattaacaaattatttta 20966179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 578
Target Start/End: Complemental strand, 25627453 - 25627406
Alignment:
Q  531 tttttatattttcgaggagttgacaacacaagtttcaatgtaatactt 578  Q
    ||||||| |||| ||||||||||||||||||||||||||  |||||||    
T  25627453 tttttatgtttttgaggagttgacaacacaagtttcaataaaatactt 25627406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 252
Target Start/End: Complemental strand, 33261142 - 33260988
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||| ||||||| ||||||||||||| ||||    | ||| |||||| || |||| ||| ||  || | |||||||||| |||   |||||||| |||||    
T  33261142 ataattcttttcatatagagactgaattgacggtgagtaaatacttataaggactgatatgactatgaataagtatattgaagaaataatatgacaatat 33261043  T
Q  198 taacaaaatattttattgtcaaagactactgtcaccaacgaactgtacaatcaaa 252  Q
     ||| |||||||||| |||||||||||| | | || |||||| ||| ||||||||    
T  33261042 caacgaaatattttactgtcaaagactattttgactaacgaagtgttcaatcaaa 33260988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 24285216 - 24285079
Alignment:
Q  88 aatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaat 187  Q
    ||||||| | |||| ||||||  |||||||||| ||||||||| || ||  || ||| || |||| ||| |||||||||||||||||||||| |  ||||    
T  24285216 aatactcacaataaatctttttatatagagactaaaatgacaataattagatatttataaggactgatatgataataagtaagtatattaaatgattaat 24285117  T
Q  188 atgaaaatattaacaaaatattttattgtcaaagacta 225  Q
    |||| ||||||||||||||| |||| | ||| ||||||    
T  24285116 atgacaatattaacaaaatagtttaatatcatagacta 24285079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 284
Target Start/End: Original strand, 10067595 - 10067784
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataa-taagtaagtatattaaaggtctaatatgaaaata 196  Q
    |||||||||||| ||||   |||||||||||||  | |||||| ||| || |||| ||| || || |||||||||||||| || | ||||||||| ||||    
T  10067595 ataactcttttcatataagaactgaaatgacaattagtaagtaattataaggactgatatgacaaataagtaagtatattgaatgactaatatgacaata 10067694  T
Q  197 ttaacaaaatattttattgtcaaagactactgtcaccaacgaactgtacaatcaaagac--ttttaaaatttcaatatattgagagacta 284  Q
    |||||||| ||||||| ||||| |||||| | | |  ||| || |  ||||||| ||||  |||||||||||| ||| ||||||||||||    
T  10067695 ttaacaaagtattttaatgtcagagactattttgattaacaaaatacacaatcagagactattttaaaatttcgatacattgagagacta 10067784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 21020974 - 21021095
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||||| ||||||||||||  |||||||||||| || |||||||||| ||||||  ||| |||||    |||||||||| |||| ||||||||| ||||     
T  21020974 ataacttttttcgtataga--ctgaaatgacaataagtaagtacttataaagaccgatatgataa----taagtatattgaaggactaatatgataataa 21021067  T
Q  198 taacaaaatattttattgtcaaagacta 225  Q
    |||| |||||||||| ||| || |||||    
T  21021068 taacgaaatattttaatgttaatgacta 21021095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 201
Target Start/End: Complemental strand, 515956 - 515854
Alignment:
Q  99 taactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatt 198  Q
    ||||||||||| |||||| ||||| ||||||| || |||||||||| || |||| ||| ||||| ||  ||||||| | | || ||||||||| ||||||    
T  515956 taactcttttcatatagaaactgatatgacaataagtaagtacttataatgactgatatgataacaaacaagtataatgagggactaatatgacaatatt 515857  T
Q  199 aac 201  Q
    |||    
T  515856 aac 515854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 33806851 - 33806904
Alignment:
Q  158 gataataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttt 211  Q
    |||||||| |||||||||| || | ||||||||| |||||||||||||||||||    
T  33806851 gataataattaagtatattgaaagactaatatgacaatattaacaaaatatttt 33806904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 25085023 - 25085087
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaaagacta 225  Q
    |||||||||||||||| || |  |||||||| |||||||||||| ||||||| ||| ||||||||    
T  25085023 aataagtaagtatattgaaagaataatatgacaatattaacaaattattttaatgttaaagacta 25085087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 9436675 - 9436729
Alignment:
Q  158 gataataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    |||||||| ||||||||||   || ||||||||| ||||||||||||||||||||    
T  9436675 gataataaataagtatattgcgggactaatatgacaatattaacaaaatatttta 9436729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 23887699 - 23887621
Alignment:
Q  121 gaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatta 199  Q
    |||||||||| ||||||||||||| ||  ||| ||| || |||||| || |||||| |||| ||||||||| |||||||    
T  23887699 gaaatgacaataaataagtacttataagaactgatatgaaaataagcaattatattgaaggactaatatgacaatatta 23887621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 33550949 - 33551062
Alignment:
Q  88 aatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtata-ttaaaggtctaa 186  Q
    ||||||| | |||||||||||  ||||||||||||||||| || |  ||| |||||| || ||||||||  | ||||| |||||||| | || || ||||    
T  33550949 aatactcacaataactctttttatatagagactgaaatgataatatgtaaatacttataaggactaatataacaataaataagtatactgaagggactaa 33551048  T
Q  187 tatgaaaatattaa 200  Q
    ||||| ||||||||    
T  33551049 tatgataatattaa 33551062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 2987110 - 2987008
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||||||||||  ||||||||||||||| |||| |||||| |||||| || ||||| || || |||||||||||||||| || | ||||||||| | |||    
T  2987110 ataactctttttatatagagactgaaataacaataaataaatacttataaggactagtatgacaataagtaagtatattgaaagactaatatgatagtat 2987011  T
Q  198 taa 200  Q
    |||    
T  2987010 taa 2987008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 4493177 - 4493050
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||||||||||| |||||||||||||||||||| ||  |||||| || ||| | | |||  ||||||| ||| |||||| |||| ||||||    |||||    
T  4493177 ataactcttttcatatagagactgaaatgacaataagcaagtacatataaaaagtgatataataataaataaatatattgaaggactaataaagcaatat 4493078  T
Q  198 taacaaaatattttattgtcaaagacta 225  Q
    ||||||| ||||||| |||||| |||||    
T  4493077 taacaaagtattttaatgtcaatgacta 4493050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 33508548 - 33508677
Alignment:
Q  89 atactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaata 188  Q
    |||||| | |||||| ||||| |||||||| || |||||||| || ||||||| || ||  ||| |||  |||||||||||||||||| |||| ||||||    
T  33508548 atactcacaataacttttttcatatagagattgcaatgacaataagtaagtacatataataactgatataataataagtaagtatattgaaggactaata 33508647  T
Q  189 tgaaaatattaacaaaatattttattgtca 218  Q
     || ||||||||  || ||||||| |||||    
T  33508648 cgataatattaatgaagtattttaatgtca 33508677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 3662484 - 3662433
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    ||||||||||||||||||||  ||||||||| |||||||||||| |||||||    
T  3662484 aataagtaagtatattaaagaactaatatgacaatattaacaaattatttta 3662433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 574
Target Start/End: Original strand, 27415238 - 27415323
Alignment:
Q  488 ttaaggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgacaacacaagtttcaatgtaat 574  Q
    |||||||||||| ||||| ||| ||| | || ||| |||||| |||| ||||||| ||| ||||||||||| |||||||||||||||    
T  27415238 ttaaggaaactaaaaaaggaaattttaaagtaaaaataacac-ttttgatatttttgagaagttgacaacataagtttcaatgtaat 27415323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 479 - 578
Target Start/End: Original strand, 15111844 - 15111943
Alignment:
Q  479 gggcattggttaaggaaactataaaaga-aaactttgaggtgaaagtaacacatttttatattttcgaggagttgacaacacaagtttcaatgtaatact 577  Q
    ||||| ||||||||||||||| |||| | ||| ||| |  ||||| |||||| ||||||||||||  ||||||||||||||||||||| ||| ||| |||    
T  15111844 gggcactggttaaggaaactaaaaaaaagaaattttaaaatgaaaataacac-tttttatattttttaggagttgacaacacaagttttaatataaaact 15111942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 518 - 578
Target Start/End: Original strand, 40995834 - 40995893
Alignment:
Q  518 tgaaagtaacacatttttatattttcgaggagttgacaacacaagtttcaatgtaatactt 578  Q
    ||||| |||||| ||||||| |||| || ||||||||||||||| ||||||||||||||||    
T  40995834 tgaaaataacac-tttttatgtttttgaagagttgacaacacaaatttcaatgtaatactt 40995893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 41303087 - 41303138
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    ||||| ||||||||||||| | ||||||||| |||||||||||| |||||||    
T  41303087 aataattaagtatattaaaagactaatatgacaatattaacaaattatttta 41303138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 3714857 - 3714980
Alignment:
Q  87 taatactctcgataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaa 186  Q
    |||||||| | ||||||||||||||| || || | || |||||| || |||||||||| || || | ||| || |||||||||||| |||||| |  |||    
T  3714857 taatactcacaataactcttttcgtaaag-gattaaagtgacaataagtaagtacttataaggagtgatatgacaataagtaagtacattaaaag-ataa 3714954  T
Q  187 tatgaaaatattaacaaaatatttta 212  Q
    ||| | |||||||||||| |||||||    
T  3714955 tattacaatattaacaaattatttta 3714980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 7604215 - 7604155
Alignment:
Q  14 tttaatgtattaaaattttataatag--tctttattgtgtattttattagtcaaaatagtc 72  Q
    |||||||||||||||||||| |||||  | ||||||||| |||||| || |||||||||||    
T  7604215 tttaatgtattaaaattttaaaatagattttttattgtgcattttaataatcaaaatagtc 7604155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 8206170 - 8206295
Alignment:
Q  100 aactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatta 199  Q
    ||||| |||| |||||||||| |||||||||  | || ||||||| || || | ||| ||||||||||||||||||| ||||  |||||||| |||||||    
T  8206170 aactcatttcatatagagactaaaatgacaattagtaggtacttataaggattcatatgataataagtaagtatattgaaggattaatatgacaatatta 8206269  T
Q  200 acaaaatattttattgtcaaagacta 225  Q
    |  || |||||| ||||||| |||||    
T  8206270 atgaattattttgttgtcaaggacta 8206295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 453 - 578
Target Start/End: Original strand, 36603642 - 36603767
Alignment:
Q  453 atgggtcatgttaaccaatgccccgagggcattggttaaggaaactataaaa-gaaaactttgaggtgaaagtaacacatttttatattttcgaggagtt 551  Q
    ||||||||||||||||| | ||||| ||||| | ||||||||| ||| |||| ||||  ||| |  ||||||| |||| ||||||| |||| || |||||    
T  36603642 atgggtcatgttaaccagtaccccgggggcactagttaaggaacctaaaaaaagaaagttttaaaatgaaagtgacac-tttttatgtttttgaagagtt 36603740  T
Q  552 gacaacacaagtttcaatgtaatactt 578  Q
    ||||||||||||| ||||| |||||||    
T  36603741 gacaacacaagttccaatgcaatactt 36603767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 34795348 - 34795449
Alignment:
Q  100 aactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatta 199  Q
    |||||||||| |||||||| ||| |||| || ||||||||| ||| || || ||||| |||||||||||  ||||||||||| |  |||||| |||||||    
T  34795348 aactcttttcctatagagattgatatgataataaataagtatttacaaggaataatatgataataagtacttatattaaaggaccgatatgacaatatta 34795447  T
Q  200 ac 201  Q
    ||    
T  34795448 ac 34795449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 26675232 - 26675121
Alignment:
Q  100 aactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatta 199  Q
    ||||||||||  ||| ||||||||||||||| |||||| |||||| ||  ||| ||| || ||||| |||||||||| |||| || |||||| |||||||    
T  26675232 aactcttttcacatatagactgaaatgacaataaataaatacttataagaactgatatgacaataaataagtatattgaaggact-atatgacaatatta 26675134  T
Q  200 acaaaatatttta 212  Q
    |  ||||||||||    
T  26675133 atgaaatatttta 26675121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 26946840 - 26946729
Alignment:
Q  100 aactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatatta 199  Q
    ||||||||||  ||| ||||||||||||||| |||||| |||||| ||  ||| ||| || ||||| |||||||||| |||| || |||||| |||||||    
T  26946840 aactcttttcacatatagactgaaatgacaataaataaatacttataagaactgatatgacaataaataagtatattgaaggact-atatgacaatatta 26946742  T
Q  200 acaaaatatttta 212  Q
    |  ||||||||||    
T  26946741 atgaaatatttta 26946729  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 27001347 - 27001220
Alignment:
Q  98 ataactcttttcgtatagagactgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatat 197  Q
    |||||||||||| ||||  || | ||||||||| || |||||| ||| ||||||| ||| || |||||||||||||||| | ||  |||||||| |||||    
T  27001347 ataactcttttcatataaggattaaaatgacaataattaagtatttataaagactgatatgacaataagtaagtatattgacggggtaatatgacaatat 27001248  T
Q  198 taacaaaatattttattgtcaaagacta 225  Q
    |||  || |||||||   ||||||||||    
T  27001247 taatgaagtattttaacatcaaagacta 27001220  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 917118 - 917215
Alignment:
Q  183 ctaatatgaaaatattaacaaaatattttattgtcaaagactactgtcaccaacgaactgtacaatcaaagac--ttttaaaatttcaatatattgag 278  Q
    ||||||||| |||||||||||||||||||||||| | |||||| | | |  ||  || |||||||||||||||  |||||||||||| ||| ||||||    
T  917118 ctaatatgacaatattaacaaaatattttattgtgagagactattttgataaataaagtgtacaatcaaagactattttaaaatttcgatacattgag 917215  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 11534904 - 11534968
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatattttattgtcaaagacta 225  Q
    ||||||||||||||||||| |  |||||||| |||||||||||| ||||||| ||| | ||||||    
T  11534904 aataagtaagtatattaaaagattaatatgacaatattaacaaattattttaatgttagagacta 11534968  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 6217582 - 6217645
Alignment:
Q  163 taagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttt-attgtcaaagacta 225  Q
    ||||||||||||||||||| ||||||||| |||| ||||  |||||||| | ||||||||||||    
T  6217582 taagtaagtatattaaaggactaatatgacaatactaacctaatattttaaatgtcaaagacta 6217645  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 11497964 - 11498015
Alignment:
Q  161 aataagtaagtatattaaaggtctaatatgaaaatattaacaaaatatttta 212  Q
    ||||||||||||||||||| |  |||||||| |||||||||||| |||||||    
T  11497964 aataagtaagtatattaaaagattaatatgacaatattaacaaattatttta 11498015  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 578
Target Start/End: Complemental strand, 24233274 - 24233181
Alignment:
Q  485 tggttaaggaaactataaaagaaaactttgagg-tgaaagtaacacatttttatattttcgaggagttgacaacacaagtttcaatgtaatactt 578  Q
    ||||||||||||||| ||||   || ||||| | |||||||||||| |||||||||||| ||  |||||||| |||||||| ||||| |||||||    
T  24233274 tggttaaggaaactaaaaaaaggaagtttgaagatgaaagtaacac-tttttatatttttgaaaagttgacagcacaagttccaatgcaatactt 24233181  T

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Target: scaffold0086 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 21801 - 21715
Alignment:
Q  120 tgaaatgacaacaaataagtacttaaaaagactaataagataataagtaagtatattaaaggtctaatatgaaaatattaacaaaat 206  Q
    ||||||||||| ||||||||||||| ||||| | | | | |||||| |||||||||| ||||  |||||||||||||||||| ||||    
T  21801 tgaaatgacaataaataagtacttataaagattgacatgctaataactaagtatattgaaggattaatatgaaaatattaacgaaat 21715  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 455 - 574
Target Start/End: Original strand, 106441 - 106558
Alignment:
Q  455 gggtcatgttaaccaatgccccgagggcattggttaaggaaactataaaagaaaactttgaggtgaaagtaacacatttttatattttcgaggagttgac 554  Q
    ||||||||||||||| || ||||||  || ||||||||||||||| ||||||||  ||| | |||||| |||||| |||||||  ||||||| ||||||     
T  106441 gggtcatgttaaccagtgtcccgaga-cactggttaaggaaactaaaaaagaaagttttaaagtgaaaataacac-tttttatgctttcgagaagttgat 106538  T
Q  555 aacacaagtttcaatgtaat 574  Q
    | |||||||| |||| ||||    
T  106539 agcacaagttccaatttaat 106558  T

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Target: scaffold0687 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 1899 - 1839
Alignment:
Q  14 tttaatgtattaaaattttataatag--tctttattgtgtattttattagtcaaaatagtc 72  Q
    |||||||||||||||||||| |||||  | ||||||||| |||||| || |||||||||||    
T  1899 tttaatgtattaaaattttaaaatagattttttattgtgcattttaataatcaaaatagtc 1839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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