View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3404R-Insertion-2 (Length: 825)

Name: NF3404R-Insertion-2
Description: NF3404R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3404R-Insertion-2
NF3404R-Insertion-2
[»] chr4 (4 HSPs)
chr4 (82-655)||(3634709-3635282)
chr4 (710-825)||(3635338-3635452)
chr4 (711-825)||(3644771-3644884)
chr4 (279-322)||(7214530-7214573)
[»] scaffold0067 (1 HSPs)
scaffold0067 (476-527)||(25590-25641)
[»] chr1 (2 HSPs)
chr1 (283-322)||(41017416-41017455)
chr1 (260-322)||(6427358-6427420)
[»] chr6 (2 HSPs)
chr6 (288-326)||(13211298-13211336)
chr6 (269-322)||(9195752-9195805)
[»] chr8 (1 HSPs)
chr8 (282-323)||(34201057-34201098)
[»] chr5 (1 HSPs)
chr5 (275-324)||(38749567-38749616)


Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 82 - 655
Target Start/End: Original strand, 3634709 - 3635282
Alignment:
Q  82 atcatcaccttgtatcaaaaagtgtgaattgaaattgttgtttttgtcgtgtgaaatcagatatttgtcagtggaacaaatataataaacaattatctta 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3634709 atcatcaccttgtatcaaaaagtgtgaattgaaattgttgtttttgtcgtgtgaaatcagatatttgtcagtggaacaaatataataaacaattatctta 3634808  T
Q  182 tgtttgtttatttgttactatttatgaagcacaaacatcaggtatgttatggtgtcagccacatgttggtgtggtgttcaacactggcacgaaaccaacg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3634809 tgtttgtttatttgttactatttatgaagcacaaacatcaggtatgttatggtgtcagccacatgttggtgtggtgttcaacactggcacgaaaccaacg 3634908  T
Q  282 catataattagattaaattttgtcattttctcaaattattatcaacgtttacatgtttgtgtcatgttgggtccgtatttgtgtttgtgcttcataggtt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3634909 catataattagattaaattttgtcattttctcaaattattatcaacgtttacatgtttgtgtcatgtcgggtccgtatttgtgtttgtgcttcataggtt 3635008  T
Q  382 actaggagtctatgacccaacaaattattgtagtatcaatttaataagcagtgaagacacaatttgttagcttgcagtccaatttagtcctgacaaaaaa 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3635009 actaggagtctatgacccaacaaattattgtagtatcaatttaataagtagtgaagacacaatttgttagcttgcagtccaatttaatcctgacaaaaaa 3635108  T
Q  482 taatactcaaattagtctatgatattgttatacaaatgagaaattagtagtccccgactcagtgtaacaggaattaatttcttccagtatgaaaatatca 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3635109 taatactcaaattagtctatgatattgttatacaaatgagaaattagtagtcccagactcagtgtaacaggaattaatttcttccagtatgaaaatatca 3635208  T
Q  582 gaaactagtttgtgtattattttgtgtcgtgactaaattggactacaagaaaattttgagggaccaaatgggtc 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  3635209 gaaactagtttgtgtattattttgtgtcgtgactaaattggactacgagcaaattttgagggaccaaatgggtc 3635282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 710 - 825
Target Start/End: Original strand, 3635338 - 3635452
Alignment:
Q  710 gttgcagaatgtgggaattctctgttggtttatatatgatcagtatttgggccagactcactgttgtatgcagcaatatatggtgctgttgaatctgctt 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3635338 gttgcagaatgtgggaattctctgttggtttatatatgatcagtatttgg-ccagactcactgttgtatgcagcaatatatggggctgttgaatctgctt 3635436  T
Q  810 ccattgcattgtttgg 825  Q
    ||||||||||||||||    
T  3635437 ccattgcattgtttgg 3635452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 711 - 825
Target Start/End: Original strand, 3644771 - 3644884
Alignment:
Q  711 ttgcagaatgtgggaattctctgttggtttatatatgatcagtatttgggccagactcactgttgtatgcagcaatatatggtgctgttgaatctgcttc 810  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||    
T  3644771 ttgcagaatgtgggaattttctgttggtttatatatgatcagtatttgg-ccagactcactgctctatgcagcaatatatggtgctgttgaatctgcttc 3644869  T
Q  811 cattgcattgtttgg 825  Q
    |||||||||||||||    
T  3644870 cattgcattgtttgg 3644884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 7214530 - 7214573
Alignment:
Q  279 acgcatataattagattaaattttgtcattttctcaaattatta 322  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||    
T  7214530 acgcatataattacattaaattatgtgattttctcaaattatta 7214573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 527
Target Start/End: Original strand, 25590 - 25641
Alignment:
Q  476 aaaaaataatactcaaattagtctatgatattgttatacaaatgagaaatta 527  Q
    |||||||||||||||||||||||| ||||||  ||||| |||||| ||||||    
T  25590 aaaaaataatactcaaattagtctgtgatatctttatataaatgacaaatta 25641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 41017416 - 41017455
Alignment:
Q  283 atataattagattaaattttgtcattttctcaaattatta 322  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  41017416 atataattacattaaattatgtcattttctcaaattatta 41017455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 6427420 - 6427358
Alignment:
Q  260 caacactggcacgaaaccaacgcatataattagattaaattttgtcattttctcaaattatta 322  Q
    |||| ||| ||||| |||||| |||||||||| ||| |||| ||| |||||||||||||||||    
T  6427420 caaccctgacacgacaccaacacatataattacattgaattatgtgattttctcaaattatta 6427358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 13211298 - 13211336
Alignment:
Q  288 attagattaaattttgtcattttctcaaattattatcaa 326  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  13211298 attatattaaattatgtcattttctcaaattattatcaa 13211336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 9195752 - 9195805
Alignment:
Q  269 cacgaaaccaacgcatataattagattaaattttgtcattttctcaaattatta 322  Q
    ||||| ||| || |||||||||| | |||||| |||||||||||||||||||||    
T  9195752 cacgacaccgacacatataattacactaaattatgtcattttctcaaattatta 9195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 34201057 - 34201098
Alignment:
Q  282 catataattagattaaattttgtcattttctcaaattattat 323  Q
    |||||||||| ||| |||| ||||||||||||||||||||||    
T  34201057 catataattacattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 38749567 - 38749616
Alignment:
Q  275 accaacgcatataattagattaaattttgtcattttctcaaattattatc 324  Q
    |||||| |||||||||| ||| |||| ||||||||| |||||||||||||    
T  38749567 accaacacatataattacattgaattatgtcattttttcaaattattatc 38749616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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