View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3404R-Insertion-3 (Length: 685)
Name: NF3404R-Insertion-3
Description: NF3404R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3404R-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 7 - 664
Target Start/End: Complemental strand, 36283149 - 36282497
Alignment:
| Q |
7 |
cacctacgtgacaaaacactagtagcaatagtttcttttgttggtaggaatgaaaggatattagcaagtacttcattgtgtaaactactgatcctatcaa |
106 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283149 |
cacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcattgtgtaaactactgatcctatcaa |
36283050 |
T |
|
| Q |
107 |
cttgttcttctagttctagttttattttggccatgcaagggttttaatgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagaggaaaac |
206 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283049 |
cttgttcttctagttctagttttcttttggccatgcaagggttttaatgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagaggaaaac |
36282950 |
T |
|
| Q |
207 |
gtacctaaaggagaggaaatatgaacggtggtaggactttacagtgacagtgaaatacggtgggaaagtatgatatgaagttaaaaagaagatgataacc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282949 |
gtacctaaaggagaggaaatatgaacggtggtaggattttacagtgacggtgaaatacggtgggaaagtatgatatgaagttaaaaagaagatgataacc |
36282850 |
T |
|
| Q |
307 |
atttggtaaagttaactgtttgagatagtgggcggtggcggtttggcggtgctatagactagctatatgtaaaatgtaaagtaggagagnnnnnnnagtt |
406 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
36282849 |
atttggtaaagttaattgtttgagatagtgggcggtggcggtttggcggtgctatagactagctatatgtaaaatgtaaagtaggagagtttttttaatt |
36282750 |
T |
|
| Q |
407 |
agttaggaaatgaagaggcatgtacacaaagaggaagaggattacaattctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaa |
506 |
Q |
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| T |
36282749 |
agttaggaaatgaagaggcatgtacacaaagaggaagaggattacaattctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaa |
36282650 |
T |
|
| Q |
507 |
aatgctcctacgacttttcttagtaatttcaacttttagttttctcttatatgtttgaaggttgagatttcatttaagaaaaaattgagagaacccaaat |
606 |
Q |
| |
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||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
36282649 |
aatgctcctactacttttcttagtaattt-aac-tttagttttctctcatatgtttgaaggttgagatttcatttaag-aaaaattgagagaatccaaat |
36282553 |
T |
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| Q |
607 |
tcttacaaagagatagattctttagaggatgaagggattagattttaggctaaattac |
664 |
Q |
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| T |
36282552 |
tcttacaaagagatagattttttagaggatgaagg--atagattttaggctaaattac |
36282497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 34553840 - 34553770
Alignment:
| Q |
40 |
tcttttgttggtaggaatgaaaggatattagcaagtacttcattgtgtaaactactgatcctatcaacttg |
110 |
Q |
| |
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||||| |||||||||||||||||||||| ||||| ||| ||||| |||| |||||||||||||||||||| |
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| T |
34553840 |
tctttggttggtaggaatgaaaggatataagcaattacctcatttggtaatctactgatcctatcaacttg |
34553770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 29914738 - 29914536
Alignment:
| Q |
7 |
cacctacgtgacaaaacactagtagcaatagtttcttttgttggtaggaatgaaaggatattagcaagtacttcatt-----gtgtaaactactgatcct |
101 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||| || |
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| T |
29914738 |
cacctacgtgacaaaacactagtttcaatagcttcttttgttgctaggaatgaaagaattttagcaagtacttcatttcctcatgtaaactactgatact |
29914639 |
T |
|
| Q |
102 |
atcaacttgttcttctagttctagttttattttggccatgcaagggttttaatgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagagg |
201 |
Q |
| |
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|||||||| || ||||||||| |||| || |||||||| | |||| ||| | |||| || ||||| |||||||||||||||||||||||| |
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| T |
29914638 |
atcaacttatt-------ttctagtttccttttagctatgcaaggatgttaaaatggtgtttggggaaaataaatgaaattagaggtgaaatggaagagg |
29914546 |
T |
|
| Q |
202 |
aaaacgtacc |
211 |
Q |
| |
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|||||||||| |
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|
| T |
29914545 |
aaaacgtacc |
29914536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 29963891 - 29963689
Alignment:
| Q |
7 |
cacctacgtgacaaaacactagtagcaatagtttcttttgttggtaggaatgaaaggatattagcaagtacttcatt-----gtgtaaactactgatcct |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||| || |
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| T |
29963891 |
cacctacgtgacaaaacactagtttcaatagcttcttttgttgctaggaatgaaagaattttagcaagtacttcatttcctcatgtaaactactgatact |
29963792 |
T |
|
| Q |
102 |
atcaacttgttcttctagttctagttttattttggccatgcaagggttttaatgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagagg |
201 |
Q |
| |
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|||||||| || ||||||||| |||| || |||||||| | |||| ||| | |||| || ||||| |||||||||||||||||||||||| |
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| T |
29963791 |
atcaacttatt-------ttctagtttccttttagctatgcaaggatgttaaaatggtgtttggggaaaataaatgaaattagaggtgaaatggaagagg |
29963699 |
T |
|
| Q |
202 |
aaaacgtacc |
211 |
Q |
| |
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|||||||||| |
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| T |
29963698 |
aaaacgtacc |
29963689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 29897520 - 29897434
Alignment:
| Q |
265 |
ggtgggaaagtatgatatgaagttaaaaagaagatga-------taaccatttggtaaagttaactgtttgagatagtgggcggtgg |
344 |
Q |
| |
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||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||| |||| |
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| T |
29897520 |
ggtggaaaagtatgatatgaagttaaaaagaagaagaacatgtttaaccatttggtaaagttaatggtttgaggtagtgggcagtgg |
29897434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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