View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3404_high_2 (Length: 313)
Name: NF3404_high_2
Description: NF3404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3404_high_2 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 88168 - 88464
Alignment:
| Q |
2 |
aatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgtttg |
101 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88168 |
aatggattgctaataagtgatggaatgatgggtagggggaaggtgaaagctctagaagttattgaagcagtaagactcggtactaatatgcagccgtttg |
88267 |
T |
|
| Q |
102 |
atgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggtt |
201 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88268 |
atgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggtt |
88367 |
T |
|
| Q |
202 |
caagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggcctgattct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
88368 |
caagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggtctgattct |
88464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 96175 - 96474
Alignment:
| Q |
1 |
caatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
96175 |
caatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgttt |
96274 |
T |
|
| Q |
101 |
gatgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggt |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
96275 |
gatgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatcacacttcagattaggtggtgtcctggaatgaggt |
96374 |
T |
|
| Q |
201 |
tcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggcctgattctct |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
96375 |
tcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgtgcaggctgctgatccgtcatggcctgattctct |
96474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 40878115 - 40877819
Alignment:
| Q |
2 |
aatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgtttg |
101 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878115 |
aatggattgctaataagtgatggaatgatgggtagggggaaggtgaaagctctagaagttattgaagcagtaagactcggtactaatatgcagccgtttg |
40878016 |
T |
|
| Q |
102 |
atgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggtt |
201 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878015 |
atgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggtt |
40877916 |
T |
|
| Q |
202 |
caagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggcctgattct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40877915 |
caagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggtctgattct |
40877819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 40870107 - 40869808
Alignment:
| Q |
1 |
caatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870107 |
caatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgttt |
40870008 |
T |
|
| Q |
101 |
gatgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggt |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40870007 |
gatgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatcacacttcagattaggtggtgtcctggaatgaggt |
40869908 |
T |
|
| Q |
201 |
tcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggcctgattctct |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40869907 |
tcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgtgcaggctgctgatccgtcatggcctgattctct |
40869808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 282
Target Start/End: Original strand, 21716267 - 21716367
Alignment:
| Q |
182 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatc |
281 |
Q |
| |
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|||||| |||| ||||||||||||||| || ||||||| || ||||| || ||||| ||||||||||| ||||| | ||||||||||||| || ||||| |
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| T |
21716267 |
tggtgttctgggatgaggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaacaatcgcttctgttcaggttgttgatc |
21716366 |
T |
|
| Q |
282 |
c |
282 |
Q |
| |
|
| |
|
|
| T |
21716367 |
c |
21716367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 28347335 - 28347416
Alignment:
| Q |
173 |
cagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaa |
254 |
Q |
| |
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|||||| | |||||| ||||||| || |||||||||||| ||||||||||||| || || | |||||||||||||| |||| |
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| T |
28347335 |
cagattcgatggtgttctggaataagattcaagatggcctttgaaaccgaggattcgtctcgaataagttggtttatgggaa |
28347416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 42730737 - 42730825
Alignment:
| Q |
182 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttca |
270 |
Q |
| |
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|||||| |||| ||||| ||||| ||| | ||||||| ||||| || || ||||| ||||||||||| |||||| || |||||||||| |
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| T |
42730737 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
42730825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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