View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3405_high_5 (Length: 221)
Name: NF3405_high_5
Description: NF3405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3405_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 325343 - 325155
Alignment:
| Q |
15 |
cacagagagcgcgatgaacggaagcactaacgccttgaccaatctcttcgtaaagttgataatgttcggctccgataggatactttttcttctctgtttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
325343 |
cacagagagcgcgatgaacggaagcactaacgccttgaccaatctcttcgtaaagttgataatgttcggctccgataggatactttttcttctctgtttc |
325244 |
T |
|
| Q |
115 |
cttttccttatctctatctttatccttcatgctgctgagcgatcgtaaggaagctatgattacggttgtggtgttgcgatgatgaagat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
325243 |
cttttccttatctctatctttatccttcatgctgctgagcgatcgtaaggaagctatgattacggttgtggtgttgcgatgatgaagat |
325155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University