View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3405_low_1 (Length: 983)

Name: NF3405_low_1
Description: NF3405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3405_low_1
NF3405_low_1
[»] chr2 (11 HSPs)
chr2 (21-977)||(14768695-14769651)
chr2 (26-291)||(452551-452822)
chr2 (28-291)||(8179869-8180140)
chr2 (26-205)||(2609695-2609875)
chr2 (30-291)||(24584545-24584812)
chr2 (27-205)||(45368561-45368741)
chr2 (108-182)||(39287849-39287923)
chr2 (109-185)||(6464948-6465024)
chr2 (24-142)||(16291943-16292062)
chr2 (27-90)||(37281388-37281451)
chr2 (26-101)||(38453553-38453628)
[»] chr4 (15 HSPs)
chr4 (26-291)||(23907237-23907508)
chr4 (26-291)||(435308-435579)
chr4 (27-291)||(48623463-48623733)
chr4 (26-291)||(1777950-1778223)
chr4 (24-182)||(53703800-53703959)
chr4 (26-194)||(55769318-55769486)
chr4 (26-194)||(55833574-55833742)
chr4 (26-186)||(39707650-39707810)
chr4 (30-205)||(27451112-27451288)
chr4 (122-187)||(33369027-33369092)
chr4 (47-165)||(44860318-44860435)
chr4 (105-205)||(16002175-16002274)
chr4 (148-196)||(41598166-41598214)
chr4 (144-182)||(2296364-2296402)
chr4 (51-96)||(41005617-41005662)
[»] chr1 (12 HSPs)
chr1 (26-291)||(43241316-43241587)
chr1 (26-205)||(8671085-8671268)
chr1 (26-291)||(51441699-51441970)
chr1 (26-291)||(49348329-49348608)
chr1 (26-289)||(29173464-29173733)
chr1 (27-185)||(32405400-32405558)
chr1 (26-184)||(34828020-34828179)
chr1 (26-205)||(45833727-45833907)
chr1 (24-205)||(35829326-35829506)
chr1 (27-101)||(37463798-37463872)
chr1 (29-136)||(7813732-7813840)
chr1 (243-291)||(11681897-11681945)
[»] chr7 (18 HSPs)
chr7 (30-291)||(33350745-33351012)
chr7 (26-291)||(36651070-36651341)
chr7 (27-291)||(39907315-39907585)
chr7 (26-205)||(46356786-46356966)
chr7 (26-291)||(32629688-32629955)
chr7 (106-291)||(22346588-22346778)
chr7 (26-205)||(38606206-38606385)
chr7 (27-185)||(36870260-36870419)
chr7 (106-291)||(38896693-38896883)
chr7 (26-171)||(11593154-11593300)
chr7 (106-189)||(33738342-33738425)
chr7 (108-189)||(32483656-32483737)
chr7 (26-205)||(24178130-24178310)
chr7 (112-195)||(17101504-17101588)
chr7 (24-187)||(48055750-48055913)
chr7 (220-291)||(11592765-11592835)
chr7 (26-91)||(49028563-49028628)
chr7 (78-158)||(21520321-21520402)
[»] chr8 (17 HSPs)
chr8 (26-205)||(36566176-36566356)
chr8 (549-827)||(7166591-7166869)
chr8 (26-197)||(15216207-15216378)
chr8 (26-291)||(42854948-42855221)
chr8 (671-827)||(3269111-3269267)
chr8 (638-857)||(31173812-31174031)
chr8 (26-291)||(36544228-36544499)
chr8 (691-827)||(3264453-3264589)
chr8 (671-822)||(3288384-3288535)
chr8 (553-766)||(3400608-3400821)
chr8 (673-751)||(13806935-13807013)
chr8 (674-771)||(13785638-13785735)
chr8 (676-776)||(3409295-3409395)
chr8 (145-205)||(6184827-6184887)
chr8 (108-182)||(11130955-11131029)
chr8 (134-188)||(25984734-25984788)
chr8 (244-295)||(41445401-41445452)
[»] scaffold0018 (1 HSPs)
scaffold0018 (26-291)||(30544-30815)
[»] chr6 (8 HSPs)
chr6 (27-291)||(5260184-5260454)
chr6 (26-204)||(9705943-9706122)
chr6 (26-197)||(6082575-6082747)
chr6 (27-205)||(20428573-20428752)
chr6 (27-205)||(30670061-30670234)
chr6 (108-287)||(3629346-3629530)
chr6 (134-183)||(2681480-2681529)
chr6 (107-184)||(2208419-2208496)
[»] chr3 (10 HSPs)
chr3 (26-205)||(52137995-52138175)
chr3 (26-291)||(51448644-51448915)
chr3 (697-834)||(32412883-32413020)
chr3 (24-164)||(9258095-9258235)
chr3 (707-809)||(6907789-6907891)
chr3 (26-186)||(38849288-38849441)
chr3 (106-182)||(48220971-48221047)
chr3 (144-189)||(50630373-50630418)
chr3 (24-86)||(19736502-19736564)
chr3 (24-86)||(19757320-19757382)
[»] chr5 (18 HSPs)
chr5 (26-291)||(24177600-24177871)
chr5 (26-291)||(20318067-20318338)
chr5 (26-291)||(2076409-2076680)
chr5 (676-826)||(30415929-30416079)
chr5 (134-287)||(27039-27196)
chr5 (107-181)||(17212459-17212533)
chr5 (550-753)||(20836335-20836538)
chr5 (26-126)||(3301095-3301196)
chr5 (107-188)||(37123755-37123836)
chr5 (550-753)||(20809980-20810183)
chr5 (108-178)||(30418593-30418662)
chr5 (26-91)||(1288524-1288589)
chr5 (26-78)||(1274560-1274612)
chr5 (244-291)||(1288687-1288734)
chr5 (24-78)||(7605754-7605809)
chr5 (244-291)||(25937173-25937220)
chr5 (114-172)||(31503071-31503129)
chr5 (142-188)||(35685042-35685088)
[»] scaffold0113 (1 HSPs)
scaffold0113 (26-269)||(13191-13442)
[»] scaffold0045 (1 HSPs)
scaffold0045 (134-291)||(90134-90296)
[»] scaffold0171 (1 HSPs)
scaffold0171 (44-205)||(5614-5778)
[»] scaffold0286 (1 HSPs)
scaffold0286 (107-184)||(518-595)
[»] scaffold0468 (1 HSPs)
scaffold0468 (688-795)||(8209-8316)


Alignment Details
Target: chr2 (Bit Score: 858; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 858; E-Value: 0
Query Start/End: Original strand, 21 - 977
Target Start/End: Complemental strand, 14769651 - 14768695
Alignment:
Q  21 cccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccacaaaatc 120  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769651 cccgtgtcctcacactagttgatgctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccacaaaatc 14769552  T
Q  121 tctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcagataagtagatcacg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769551 tctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcagataagtagatcacg 14769452  T
Q  221 cttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtctcca-taaatcatcatttgataccgtaagt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  14769451 cttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtctccattaaatcaccatttgataccgtaagt 14769352  T
Q  320 tataagttcaaacgttgcttaaagtagcatgtcaaaattcgctataatctagtgaagaaacattataaactcattagagaatgaccttactttgagcata 419  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769351 tataagttcaaaggttgcttaaagtagcatgtcaaaattcgctataatctagtgaagaaacattataaactcattagagaatgaccttactttgagcata 14769252  T
Q  420 caagttcatgcgctataactttcctctataaactagtggtttgatctggccaaatagagccctatagnnnnnnnnnngtaatttattctcattctatgtg 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          |||||||||||||||||||||||    
T  14769251 caagttcatgcgctataactttcctctataaactagtggtttgatctggccaaatagagccttatag-tttttttttgtaatttattctcattctatgtg 14769153  T
Q  520 ttgtgttgttttgtgttttataattatctaaggaatgaaggtgaactagtaaagcaaattgttggtgacgttttcacaaaactagacagttcatttctgt 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14769152 ttgtgttgttttgtgttttataattatctaaggaatgaaggtgaactagtaaagcaaattgtcggtgacgttttcacaaaactagacagttcatttctgt 14769053  T
Q  620 ctatttccgagttcccagttgggttggaacctcgtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctgggg 719  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14769052 ctatttccgagttcccagttgggttggaacctcgtgtgcaaaaagtggccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctaggg 14768953  T
Q  720 aatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagct 819  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14768952 aatgggtggatctggtaaaacaaccacagccaaatccatctacaatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagct 14768853  T
Q  820 tgtgaaaatgataattatagaggggttattcatttacagnnnnnnnttctttcagatgccctgaaaacaaaggagaagatagatagcattgggttgggag 919  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14768852 tgtgaaaatgataattatagaggggttattcatttacagaaaaaaattctttcagatgccctgaaaacaaaggagaagatagatagtattgggttgggag 14768753  T
Q  920 caaataagttggagacaagacttagagggaaaaaggtattcattgtacttgatgatgt 977  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14768752 caaataagttggagacaagacttagagggaaaaaggtattcattgtacttgatgatgt 14768695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 452551 - 452822
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctc 124  Q
    |||||||||||||| ||| ||| |||||||||||  |||||||| | ||||||  ||||| |||||  ||||||||    | ||||||||||||||||||    
T  452551 gtcctcacactagtcgaacctccctcatacatattcttgatagccctaatataggcaatcctaacccctttcttctcccgggctttccacaaaatctctc 452650  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 216  Q
    | | |||| |||| |||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||    
T  452651 tcggtactctatcgtacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat 452750  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  452751 --tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 452822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 28 - 291
Target Start/End: Complemental strand, 8180140 - 8179869
Alignment:
Q  28 cctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctcta 126  Q
    |||||||||||| ||||||| ||| |||||||| |||||||| | |||||   ||||| |||||  ||||||||  |  ||||||||||||||||||||     
T  8180140 cctcacactagtcgaagctccctcgtacatatccttgatagccctaatattggcaatcctaacccctttcttctccagggctttccacaaaatctctctc 8180041  T
Q  127 gc--tactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatc--------agataagtagat 216  Q
     |  |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||        |  |||||||||    
T  8180040 tcggtactctatcatacgtcttttccaaatcaatgaaaaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaagtagat 8179941  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       |||| |||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  8179940 --tgctttcatagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 8179869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 2609875 - 2609695
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctc 124  Q
    |||||||||||| | |||||||||||||||||||| |||||||| | ||||||  ||||| | |||  ||||||||    | ||||||||||||||||||    
T  2609875 gtcctcacactaatcgaagctctctcatacatatccttgatagccctaatataggcaatccttacccctttcttctccggggctttccacaaaatctctc 2609776  T
Q  125 t-agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    | ||| ||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||    
T  2609775 tcagc-actctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgatccatca 2609695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 24584545 - 24584812
Alignment:
Q  30 tcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagc 128  Q
    ||||| |||| ||||||| |||||||||||| ||||||||||  |||||  ||||| |||||  ||||||||  |  | |||||||||||||||||| |     
T  24584545 tcacagtagtcgaagctccctcatacatatccttgatagctctgatataggcaatcctaacccctttcttctccagggttttccacaaaatctctctgga 24584644  T
Q  129 tactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacg 220  Q
     ||| ||||||||| ||||||||||||||||||||  | ||| ||||||||||||||| ||| |||||| |||||||      ||  |||||||||  ||    
T  24584645 aactctatcatacgccttctccaaatcaatgaaaattaggtgtaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat--cg 24584742  T
Q  221 cttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    |||||||| | |||||||| | ||||||||||||||  ||||||  ||| || |||||| |||||||||||    
T  24584743 cttccatactcgacctccc-agacataaaaccaaatcagttatctataactcgagtctcctttcttagtct 24584812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 45368561 - 45368741
Alignment:
Q  27 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaa-tctctc 124  Q
    ||||||||||||| ||||||| |||||||||||| | |||||||| ||||||  ||||| | |||   |||||||  |  ||||||||||||| ||||||    
T  45368561 tcctcacactagtcgaagctccctcatacatatcctggatagctctaatataggcaatcctcaccccattcttctccagggctttccacaaaaatctctc 45368660  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    ||| |||| ||||||||| |||||| |||||||||||||| ||||| ||||  ||||||||| ||| |||||| |||||||    
T  45368661 taggtactctatcatacgccttctcaaaatcaatgaaaactaagtgtaagttctttttatccgtccgatatcgctccatca 45368741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 39287849 - 39287923
Alignment:
Q  108 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttt 182  Q
    ||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||  ||||||| || |||||    
T  39287849 tttccactaaatctctctagccactttatcacatgtcttctccaaatcaatgaaaactgagtgcaaatccttttt 39287923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 6465024 - 6464948
Alignment:
Q  109 ttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 185  Q
    ||||||||||||| ||||  |||||||||||| ||||| ||||||||||||||||  |||||||| | |||||||||    
T  6465024 ttccacaaaatctatctatgtactttatcatatgtcttatccaaatcaatgaaaattaagtgcaatttttttttatc 6464948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 16292062 - 16291943
Alignment:
Q  24 gtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctc 122  Q
    |||||||||||||||| |||||||||||||||||||| |||||||  | ||||||  ||||| |||||  ||||||||  |    |||||||||||||||    
T  16292062 gtgtcctcacactagtcgaagctctctcatacatatccttgatagtcctaatataggcaatcctaacccctttcttctccaggattttccacaaaatctc 16291963  T
Q  123 tctagctactttatcatacg 142  Q
    ||| | |||| |||||||||    
T  16291962 tctcgatactctatcatacg 16291943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 37281451 - 37281388
Alignment:
Q  27 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaac 90  Q
    ||||||||||||||||||||| || ||||||||| ||||||| || ||||||| ||||| ||||    
T  37281451 tcctcacactagttgaagctcccttatacatatccttgatagttctaatataatcaatcctaac 37281388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 38453553 - 38453628
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct 101  Q
    |||||||||||||| ||| |||||||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||    
T  38453553 gtcctcacactagtcgaaactctctcatacatatccttgatagccctaatataggcaatcctaacccctttcttct 38453628  T

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Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 23907237 - 23907508
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| |||||| |||||| |||||  ||||||||  |  |||||||||||||||||||    
T  23907237 gtcctcacactagtcgaagctccctcatacatatccttgatagctctaatatagacaatcctaacccctttcttctccagggctttccacaaaatctctc 23907336  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 216  Q
    | | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| | | |||||| |||||||      ||  |||||||||    
T  23907337 ttggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgcgtcgaagtaagtagat 23907436  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       ||||||||||| |||||||| |  ||||||||||||||| ||||| |||| || |||||| |||||||||||    
T  23907437 --tgcttccatagtcgacctccc-aggcataaaaccaaattgattatccgtaactcgagtctcctttcttagtct 23907508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 435579 - 435308
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  435579 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctc 435480  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 216  Q
    | | |||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| || ||||      ||  |||||||||    
T  435479 tcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctctatcacgcgtcgaagtaagtagat 435380  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       |||||||||||  ||||||| |  ||||||||||||||||||||| |||| || || ||| |||||||||||    
T  435379 --tgcttccatagtcaacctccc-aggcataaaaccaaattggttatccgtaactcgagcctcctttcttagtct 435308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 27 - 291
Target Start/End: Original strand, 48623463 - 48623733
Alignment:
Q  27 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 125  Q
    ||||||||||||| ||||||| ||| |||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  ||||||||||||||||||||    
T  48623463 tcctcacactagtcgaagctccctcgtacatatctttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctct 48623562  T
Q  126 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatc 217  Q
     | |||| ||||||||  ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||     
T  48623563 cggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatcacgcgtcgaactaagtagat- 48623661  T
Q  218 acgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
      ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||  |||||||||||    
T  48623662 -tgcttccatagtcgacctccc-aggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtct 48623733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 1777950 - 1778223
Alignment:
Q  26 gtcctcacactagttgaa-gctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctct 123  Q
    |||||||||||||||||| |||| ||||||||||||||||||||| | ||||||  ||||  |||||  ||||||||  |  ||||||||||||||||||    
T  1777950 gtcctcacactagttgaaagctccctcatacatatcattgatagccctaatataggcaattctaacccctttcttctcaagggctttccacaaaatctct 1778049  T
Q  124 ctagctactttatcatacgtc-ttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga--------taagtag 214  Q
    || | |||| ||||||||  | || ||||||||||||||||| |||||||||| |||||||||| ||| |||||| ||||||| |        |||||||    
T  1778050 cttgatactctatcatacacctttttccaaatcaatgaaaactaagtgcaagttttttttatccgtccgatatcgctccatcacacgtcgaagtaagtag 1778149  T
Q  215 atcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    ||   |||||||||||  ||||||| |  ||||||| ||||||||||||| |||| || |||||| |||||||||||    
T  1778150 at--tgcttccatagtcaacctccc-aggcataaaatcaaattggttatccgtaactcgagtctcctttcttagtct 1778223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 53703959 - 53703800
Alignment:
Q  24 gtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctc 122  Q
    |||||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||| |  |||||||||||||||||    
T  53703959 gtgtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttcttcagggctttccacaaaatctc 53703860  T
Q  123 tctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttt 182  Q
    ||| | ||||  |||||||| ||| ||||||||| ||||||| ||||||||||| |||||    
T  53703859 tctcggtactcaatcatacgccttttccaaatcagtgaaaactaagtgcaagtccttttt 53703800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 55769318 - 55769486
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 124  Q
    ||||||| |||||| ||||||| || |||||||||||||||||||| ||||||| ||||| ||| |  |||||||| ||  |||||||||||||||| ||    
T  55769318 gtcctcaaactagtcgaagctccct-atacatatcattgatagctctaatataagcaatcctaatccctttcttctctagagctttccacaaaatctgtc 55769416  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaata 194  Q
    |||  ||| || |||||| ||| || |||||||||| || ||| ||||||||||||||||||||||||||    
T  55769417 taggcactctaccatacgccttatcaaaatcaatgataatcaactgcaagtcttttttatccatccaata 55769486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 55833574 - 55833742
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 124  Q
    ||||||| |||||| ||||||| || |||||||||||||||||||| ||||||| ||||| ||| |  |||||||| ||  |||||||||||||||| ||    
T  55833574 gtcctcaaactagtcgaagctccct-atacatatcattgatagctctaatataagcaatcctaatccctttcttctctagagctttccacaaaatctgtc 55833672  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaata 194  Q
    |||  ||| || |||||| ||| || |||||||||| || ||| ||||||||||||||||||||||||||    
T  55833673 taggcactctaccatacgccttatcaaaatcaatgataatcaactgcaagtcttttttatccatccaata 55833742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 39707810 - 39707650
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccacaaaatctctct 125  Q
    |||||||| |||||  || ||| ||||||||| || |||||||||| ||||||  |||||  ||||  ||||||||    |  || ||||||| ||||||    
T  39707810 gtcctcacgctagtcaaaactccctcatacatttccttgatagctctaatataggcaatccaaacccctttcttctccaggactttcacaaaacctctct 39707711  T
Q  126 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcc 186  Q
    ||  ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39707710 aggcactctatcatacgtcttctccaaatcaatgaaaactaagtgcaagtcttttttatcc 39707650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 27451112 - 27451288
Alignment:
Q  30 tcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagc 128  Q
    |||||||||| ||||||| ||||||||||||   |||||||| ||||||  ||||| | | |  ||||||||  |  | |||||||||||||||||||      
T  27451112 tcacactagtggaagctccctcatacatatcccagatagctctaatataggcaatcctcatccctttcttctccagggttttccacaaaatctctctaag 27451211  T
Q  129 tactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    |||| |||| |||| ||||||||||| | ||||||| || |||||||||||||||||| ||| |||||| |||||||    
T  27451212 tactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatca 27451288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 33369092 - 33369027
Alignment:
Q  122 ctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcca 187  Q
    ||||||| ||| |||||| | |||| ||||||||||||||||| ||||||||||||||||||||||    
T  33369092 ctctagcaactctatcatgcatcttttccaaatcaatgaaaactaagtgcaagtcttttttatcca 33369027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 44860435 - 44860318
Alignment:
Q  47 ctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtct 145  Q
    |||||||||||||| | |||||||| |||||| ||| || |||||  |||||||| ||  |||||||||||||||| |||||  |||  |||||||| ||    
T  44860435 ctctcatacatatcctagatagctcgaatatagacattcctaacccctttcttctctaaggctttccacaaaatctgtctaggcact--atcatacgcct 44860338  T
Q  146 tctccaaatcaatgaaaacc 165  Q
     |||||||||||||||||||    
T  44860337 cctccaaatcaatgaaaacc 44860318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 16002274 - 16002175
Alignment:
Q  105 tgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatc 204  Q
    |||||||||||||||||||||||  ||||| ||||| | ||| || |||||||||||||| ||||| || | |||||||||| | |||||| ||| ||||    
T  16002274 tgctttccacaaaatctctctaggaactttttcatatgccttttc-aaatcaatgaaaactaagtgaaatttttttttatccgtgcaatattgttacatc 16002176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 41598214 - 41598166
Alignment:
Q  148 tccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatc 196  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  41598214 tccaaatcattgaaaactaagtgcaagtctcttttatccatccaatatc 41598166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 2296402 - 2296364
Alignment:
Q  144 cttctccaaatcaatgaaaaccaagtgcaagtctttttt 182  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  2296402 cttctccaaatcaatgaaaactaagtgcaagtctttttt 2296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 41005662 - 41005617
Alignment:
Q  51 catacatatcattgatagctccaatataaacaatcttaaccttttt 96  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  41005662 catacatatcattgataactcaaatataagcaatcttaaccttttt 41005617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 43241316 - 43241587
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  43241316 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagagctttccacaaaatctctc 43241415  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 216  Q
    | | |||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||    
T  43241416 tcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat 43241515  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       ||||||||||| |||||||| |  ||||||||||||||||||||| |||| |  |||||| |||||||||||    
T  43241516 --tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtct 43241587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 8671268 - 8671085
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatctt---aacctttttcttctt-attgctttccacaaaatct 121  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | |||||| |||||  |   ||||  ||||||||  | |||||||||||||||||    
T  8671268 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatatagacaattattctaacccctttcttctccagtgctttccacaaaatct 8671169  T
Q  122 ctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    |||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||    
T  8671168 ctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 8671085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 51441699 - 51441970
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||| | ||||||| |||||||||||| |||||||| | ||||||  ||||  |||||  ||||||||  |  |||||||||||||||||||    
T  51441699 gtcctcacactaatcgaagctccctcatacatatccttgatagccctaatataggcaattctaacccatttcttctccagggctttccacaaaatctctc 51441798  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 216  Q
      | |||| |||||||||  || ||||||||||||||||| ||||||||||||||||||||| ||  |||||  |||||||      ||  |||||||||    
T  51441799 acgatactctatcatacgctttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgatatcactccatcacgcgtcgatgtaagtagat 51441898  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  51441899 --tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 51441970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 49348329 - 49348608
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| ||||| |||||||||  |  |||||||||||||||||||    
T  49348329 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccttttcttctccagggctttccacaaaatctctc 49348428  T
Q  125 tagctactttatcat--------acgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--t 208  Q
    | | |||| ||||||        ||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |    
T  49348429 tcggtactctatcatactatcacacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagt 49348528  T
Q  209 aagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    ||||||||   ||||||||||| |||||||| |  |||||||||||||||||||||  ||| || |||||  |||||||||||    
T  49348529 aagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccataactcgagtcttctttcttagtct 49348608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 29173464 - 29173733
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 124  Q
    |||||||||||||| ||| ||  | ||| ||||||||||||||||| ||||||  ||||| |||||  | |||||| ||   |||||||||||| |||||    
T  29173464 gtcctcacactagtcgaaacttccccatgcatatcattgatagctctaatataggcaatcctaacccctctcttctctaggcctttccacaaaacctctc 29173563  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga--------taagtagat 216  Q
    | |  ||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||  |||||| ||||||| |        |||||| ||    
T  29173564 tcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcacacgtcgaagtaagtaaat 29173663  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagt 289  Q
       ||||||||||| ||||||| |   |||||||||||||| |||||| |||| || ||||||||||||||||    
T  29173664 t--gcttccatagtcgacctcctagg-cataaaaccaaattagttatccgtaactcgagtctcttttcttagt 29173733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 32405400 - 32405558
Alignment:
Q  27 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctct 125  Q
    |||||| ||||||  |||||| | | ||| |||| || ||||||| ||||||| ||||  |||||  |||||||| ||| ||||||||||||||||||||    
T  32405400 tcctcaaactagtcaaagctcccgcgtacgtatcctttatagctctaatataagcaattctaacccctttcttctctatggctttccacaaaatctctct 32405499  T
Q  126 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 185  Q
    ||  ||| ||||||||| ||| ||||||||||||||||| |||||||  |||||||||||    
T  32405500 agacactctatcatacg-cttttccaaatcaatgaaaactaagtgcacatcttttttatc 32405558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 34828020 - 34828179
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 124  Q
    |||||||||||||| || || | |||||||||||| | ||||| || ||||||| ||||| |||||| |||||||| ||   |||||||||||||||||     
T  34828020 gtcctcacactagtggaggccccctcatacatatcttggatagatcgaatataagcaatcctaacctctttcttctctaggactttccacaaaatctctt 34828119  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttat 184  Q
    |||  ||| ||||||||   |||| ||||||||||||||| |||||| |||| |||||||    
T  34828120 tagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttat 34828179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 45833907 - 45833727
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaac--ctttttcttcttattgctttccacaaaatctct 123  Q
    ||||||||| |||| ||||||| |||||| ||||| |||||| ||| | ||||||||||| ||||  ||||||  |||||  |||||||||||||| |||    
T  45833907 gtcctcacattagtcgaagctccctcatatatatctttgataactctagtataaacaatcctaacatcttttttctcttag-gctttccacaaaatatct 45833809  T
Q  124 ctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    ||||  ||| |||| |||| ||||| ||||||||||||||| |  | ||| ||||||||||   |||||||||  |||||||    
T  45833808 ctagacactctatcgtacgccttcttcaaatcaatgaaaactatatacaaatcttttttatttgtccaatatcactccatca 45833727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 35829326 - 35829506
Alignment:
Q  24 gtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctc 122  Q
    |||| ||||||||||||||||  | ||||| |||||  |||||||||| || |||| ||||| ||||   |||||| | ||  |||||||| |||| |||    
T  35829326 gtgtactcacactagttgaagtcccctcatgcatatatttgatagctcgaacataagcaatcataactcatttcttttctagggctttccaaaaaacctc 35829425  T
Q  123 tctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    |||||  |||  || ||| | ||||||||||||||||||||| ||||| |  ||||||||||   |||||||| |||||||||    
T  35829426 tctaggcact--attataagccttctccaaatcaatgaaaactaagtgtatatcttttttatttgtccaatattgttccatca 35829506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 37463798 - 37463872
Alignment:
Q  27 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct 101  Q
    ||||||||||||||| ||||| |||||||| ||| |||||||||| | ||||| ||||| |||||  ||||||||    
T  37463798 tcctcacactagttgcagctccctcatacacatccttgatagctctagtataagcaatcctaacccctttcttct 37463872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 7813840 - 7813732
Alignment:
Q  29 ctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctag 127  Q
    |||| |||||| ||||||||||||||||| || |||||| ||| ||||||| || || ||||   |||||||| || || |||||| |||||||||||||    
T  7813840 ctcatactagtcgaagctctctcatacatgtccttgataactctaatataagcagtcgtaacacatttcttctctagtgttttccataaaatctctctag 7813741  T
Q  128 ctactttat 136  Q
      |||||||    
T  7813740 acactttat 7813732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 11681945 - 11681897
Alignment:
Q  243 acataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    |||||||||||| ||| ||||| |||| |||||||||||||||||||||    
T  11681945 acataaaaccaatttgattatcggtaactcaagtctcttttcttagtct 11681897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 6e-43; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 33350745 - 33351012
Alignment:
Q  30 tcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagc 128  Q
    |||||||||| |||||||||||||||||||| |||||||| | ||||||  ||||| ||||| |||||||||  |  |||||||||||||||||||| |     
T  33350745 tcacactagtcgaagctctctcatacatatccttgatagccctaatataggcaatcctaacccttttcttctccagggctttccacaaaatctctctcgg 33350844  T
Q  129 tactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatcacg 220  Q
    |||| ||||||||  ||| |||||||||| |||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||   |    
T  33350845 tactctatcataccccttttccaaatcaaagaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgttgaagtaagtagat--tg 33350942  T
Q  221 cttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    |||||||||| |||||||| || ||||||||||||||||||||| |||| |  |||||| |||||||||||    
T  33350943 cttccatagtcgacctccc-aagcataaaaccaaattggttatccgtaactagagtctcctttcttagtct 33351012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 36651341 - 36651070
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||| ||| |||||||||||| |||||||| | ||||||  ||||| |||||  || |||||  |  ||||||||| |||||||||    
T  36651341 gtcctcacactagtcgaaactccctcatacatatccttgatagccctaatataggcaatcctaaccccttacttctccagggctttccacgaaatctctc 36651242  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 216  Q
    | | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||    
T  36651241 tcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat 36651142  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       ||||||||| | |||||||| | |||||||||||||||||||||| |||| || |||||| |||||||||||    
T  36651141 --tgcttccataatcgacctccc-agacataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 36651070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 27 - 291
Target Start/End: Original strand, 39907315 - 39907585
Alignment:
Q  27 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 125  Q
    ||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  ||||||||||||||||||||    
T  39907315 tcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctct 39907414  T
Q  126 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatc 217  Q
     | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||  ||| |||||| |||||||      ||  |||||||||     
T  39907415 cggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtcgaagtaagtagat- 39907513  T
Q  218 acgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
      ||||||| ||| |||||||| |  ||||||||||||||||||||| |||| ||  ||||| |||||||||||    
T  39907514 -tgcttccacagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgggtctcctttcttagtct 39907585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 46356786 - 46356966
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||  |||||  ||||||||  |  |||||||||||||||||||    
T  46356786 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaattctaacccctttcttctccagggctttccacaaaatctctc 46356885  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    | | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||| | ||| |||||| |||||||    
T  46356886 tcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttattcgtccgatatcgctccatca 46356966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 32629955 - 32629688
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    ||||||||||  || ||||||| |||||||||||| | |||||||  ||||||  ||||| | |||  ||||||||| |  |||||||||||||||||||    
T  32629955 gtcctcacacaggtcgaagctccctcatacatatcctggatagctttaatataggcaatcctcacccctttcttcttcagggctttccacaaaatctctc 32629856  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca----gataagtagatcacg 220  Q
    ||| |||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||  |||||||       ||||||||  ||    
T  32629855 taggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatctctccatcacgcgtcgaagtagat--cg 32629758  T
Q  221 cttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    |||||||||| ||||| || |  |||||| |||||||||||||| ||||    ||||||||||||||||||    
T  32629757 cttccatagtcgaccttcc-aggcataaagccaaattggttatccgtaacgtgagtctcttttcttagtct 32629688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 106 - 291
Target Start/End: Complemental strand, 22346778 - 22346588
Alignment:
Q  106 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    |||||||||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| | | |||||| |||||||    
T  22346778 gctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatca 22346679  T
Q  206 ------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
          ||  |||||||||   ||||||||||| |||||||| |  ||||||||||||||||||||| | || || |||||| |||||||||||    
T  22346678 cgtgtcgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgaaactcgagtctcctttcttagtct 22346588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 38606385 - 38606206
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| | |||||||| ||||||  ||||| | | |  ||||||||  |  |||||||||||||||||||    
T  38606385 gtcctcacactagtcgaagctccctcatacatatcttggatagctctaatataggcaatcctcatccctttcttctccagggctttccacaaaatctctc 38606286  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
     || ||||  |||||||| |||||| |||||||||||||| ||||| ||||||||||||||| ||| |||||| |||||||    
T  38606285 caggtactc-atcatacgccttctcaaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatca 38606206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 36870260 - 36870419
Alignment:
Q  27 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 125  Q
    ||||||||||||||||||||| |||||||||||| |||||  ||| ||||||  ||||| |||||  ||| || |  |  ||||||||||||||||||||    
T  36870260 tcctcacactagttgaagctccctcatacatatccttgatgactctaatataggcaatcctaacccctttattttccagggctttccacaaaatctctct 36870359  T
Q  126 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 185  Q
    ||  ||| ||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  36870360 aggcactctatcatacgccttctccaaatcaatgaaaattaagtgcaagtattttttatc 36870419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 106 - 291
Target Start/End: Complemental strand, 38896883 - 38896693
Alignment:
Q  106 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccat-- 203  Q
    |||||||||||||||||||| | |||| ||||||||  ||| ||||||| ||||||||| ||||||||||||||||||||| ||| |||||| |||||      
T  38896883 gctttccacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccattg 38896784  T
Q  204 ------cagataagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
           |  |||||||||   |||||||||||||||||||| |  ||||||||| ||||||||||| |||| || |||||| |||||||||||    
T  38896783 tgcgtcgaagtaagtagat--tgcttccatagttgacctccc-aggcataaaaccgaattggttatccgtaactcgagtctcctttcttagtct 38896693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 11593300 - 11593154
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  ||||  |||||||||||||    
T  11593300 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggcttgtcacaaaatctctc 11593201  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgc 171  Q
    | | |||| ||||||||| ||| ||||||||||||||||| ||||||    
T  11593200 tcggtactctatcatacgccttttccaaatcaatgaaaactaagtgc 11593154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 33738342 - 33738425
Alignment:
Q  106 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatc 189  Q
    |||||||||||||||| |||||| |||||||| || |  || ||||||||||||||||  ||||||||||||||||||||||||    
T  33738342 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatc 33738425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 32483737 - 32483656
Alignment:
Q  108 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatc 189  Q
    |||||||||||||||||| | |  |||||| || ||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  32483737 tttccacaaaatctctcttggtgatttatcgtatgtcttctacaaatcaatgaaaattaagtgcaagtcttttttatccatc 32483656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 24178130 - 24178310
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||| ||||| ||||||| |||||||| ||| |||||||||  ||| ||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  24178130 gtcctcaccctagtcgaagctccctcatacacatccttgatagctttaatttaggcaatcctaacccctttcttctccagggctttccacaaaatctctc 24178229  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    ||| |||| | ||||||  | ||||||||||||||||||| || || ||  ||||| ||||| |||  ||||| |||||||    
T  24178230 taggtactctgtcatacaccgtctccaaatcaatgaaaactaattgtaacccttttgtatccgtccggtatcgctccatca 24178310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 17101504 - 17101588
Alignment:
Q  112 cacaaaatctctctagcta-ctttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatat 195  Q
    |||||||| |||||||| | || ||||| ||||  |||||||||| |||||||| |||| |||||||||||||||||||| ||||    
T  17101504 cacaaaatttctctagccatctctatcacacgtaatctccaaatcgatgaaaactaagtacaagtcttttttatccatccgatat 17101588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 48055750 - 48055913
Alignment:
Q  24 gtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctc 122  Q
    |||||||||||||||||||  ||| || ||| ||||| || ||||||| ||||||  || || |||||  |||||||| ||  | ||||||  |||||||    
T  48055750 gtgtcctcacactagttgagactcccttatagatatccttcatagctcgaatataggca-tcctaacccctttcttctctagggatttccatgaaatctc 48055848  T
Q  123 tctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcca 187  Q
    | |||  ||| ||||| ||| ||||||| ||||||||||||| ||||||||||| |||| |||||    
T  48055849 tttaggcactctatcacacgccttctccgaatcaatgaaaactaagtgcaagtcgttttaatcca 48055913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 11592835 - 11592765
Alignment:
Q  220 gcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    ||||||||||| ||||||| ||  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  11592835 gcttccatagtcgacctcc-aagccataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 11592765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 49028628 - 49028563
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacc 91  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||    
T  49028628 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacc 49028563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 21520321 - 21520402
Alignment:
Q  78 aaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaat 158  Q
    |||||||| |||| |||||||||| ||  ||||||||| | |||||||||   | |||||||||| ||||||||||||||||    
T  21520321 aaacaatcataacatttttcttctctagggctttccacgatatctctctaaacattttatcatacatcttctccaaatcaat 21520402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 5e-40; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 36566176 - 36566356
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  36566176 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctc 36566275  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    | | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||    
T  36566276 tcgatactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 36566356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 549 - 827
Target Start/End: Complemental strand, 7166869 - 7166591
Alignment:
Q  549 aaggaatgaaggtgaactagtaaagcaaattgttggtgacgttttcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaa 648  Q
    ||||| ||||| |||||||||  ||||||||||||  ||  ||||  ||||||||||||   |||   ||||||||  ||| || |||||||| ||||||    
T  7166869 aaggagtgaagctgaactagtgcagcaaattgttgaggatcttttggcaaaactagacaacgcatccttgtctattatcgaatttccagttggattggaa 7166770  T
Q  649 cctcgtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacag 748  Q
     ||||  |||| ||||||   || ||||||| ||  ||  ||||||| ||||||||||||||||| |||||||||||  | || ||||||||||||||||    
T  7166769 tctcgcatgcacaaagttattgaatttattgcaactcagccaagcaaagtttgtatgatagggatatggggaatgggcaggtcgggtaaaacaaccacag 7166670  T
Q  749 ccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaaa 827  Q
    ||||| |||||||||||| |||||||||||| ||| || ||||||||||| |||||||  | |||||||  ||||||||    
T  7166669 ccaaagccatctataatcaaattcatcgcaaatttttgaatagaagtttcattgaaaacgttagagaagtatgtgaaaa 7166591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 15216207 - 15216378
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccacaaaatctctct 125  Q
    |||||||||||||| ||||||| |||||| ||||||| |||||||| ||||||  ||||| |  ||  |||||||| || | |||||||||||||| |||    
T  15216207 gtcctcacactagtcgaagctccctcatatatatcatagatagctctaatataggcaatcctcgcccctttcttctcatggatttccacaaaatctatct 15216306  T
Q  126 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcg 197  Q
    || |||| ||||||||| ||| | ||||||||||||||| || || ||||||||||||||||| | ||||||    
T  15216307 aggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccattcgatatcg 15216378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 42854948 - 42855221
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| ||||||||||||   |||||||| ||| ||  ||||| | |||  ||||||||    | ||||||||||||| ||||    
T  42854948 gtcctcacactagtcgaagctccctcatacatatcccggatagctctaatttaggcaatcctcacccctttcttctacgaggctttccacaaaatatctc 42855047  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtc--ttttttatccatccaatatcgttccatca------ga--taagtag 214  Q
    |||  ||| ||||||| | ||||||||||||||||||||| ||||| |||||  |||||||||| |||||||||| |||||||      ||  |||||||    
T  42855048 taggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtcttttttttatccgtccaatatcgctccatcacgcgtcgaagtaagtag 42855147  T
Q  215 atcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    ||  |||||| ||||| |||||||| |  ||||||||||||||||||||| ||||  | ||||||||||||||||||    
T  42855148 at--cgcttcaatagtcgacctccc-aggcataaaaccaaattggttatccgtaacgcgagtctcttttcttagtct 42855221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 671 - 827
Target Start/End: Complemental strand, 3269267 - 3269111
Alignment:
Q  671 agtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaat 770  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| |   ||||| ||   |||    
T  3269267 agtttattgaaaaacaatcaagcaaagtttgcatgatagggatctggggtatgggtggatcaggtaaaacaacaacagccagagatatctacaacaaaat 3269168  T
Q  771 tcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaaa 827  Q
    ||||||||| |||||  ||   |||||| |||||||||| ||||||| || ||||||    
T  3269167 tcatcgcaaatttgtagatcacagtttcattgaaaatattagagaagtttatgaaaa 3269111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 638 - 857
Target Start/End: Original strand, 31173812 - 31174031
Alignment:
Q  638 ttgggttggaacctcgtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaa 737  Q
    |||| |||||| | |||||||||||| || || |||||||||| || || |||| ||| || || ||||||||||| ||||||||||||||||| || ||    
T  31173812 ttggattggaatcccgtgtgcaaaaaattaccaagtttattgataatcaatcaaacaaagtctgcatgatagggatatggggaatgggtggatccgggaa 31173911  T
Q  738 aacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatag---aagtttcgttgaaaatatcagagaagcttgtgaaaatgataat 834  Q
    |||||||||||||||| | ||||| |||  ||| ||||| | |||||    |||   ||||||| |||||| |||  |||||| |||||   || |||||    
T  31173912 aacaaccacagccaaagctatctacaataaaatccatcgtaggtttgaaggtagaacaagtttctttgaaagtattcgagaagtttgtg---ataataat 31174008  T
Q  835 tatagaggggttattcatttaca 857  Q
    | |||||||||||||||||||||    
T  31174009 tctagaggggttattcatttaca 31174031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 36544499 - 36544228
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatct-taacctttttcttctt-attgctttccacaaaatctct 123  Q
    |||||||||||||| ||||||| |||||| ||||| |||||||| | ||||||  |||  | |||||  ||||||||  |  |||||||||||||||| |    
T  36544499 gtcctcacactagtcgaagctccctcatatatatccttgatagccctaatataggcaaattctaacccctttcttctccagggctttccacaaaatctat 36544400  T
Q  124 ctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtaga 215  Q
    || | |||| ||||||||| ||| ||||||||||||||||| |||||||| |||||||||||| ||  |||||| || ||||      ||  ||||||||    
T  36544399 ctcggtactctatcatacgcctt-tccaaatcaatgaaaactaagtgcaaatcttttttatccgtcagatatcgctcaatcacgcgtcgaagtaagtaga 36544301  T
Q  216 tcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    |   ||||||||||| |||||||| |  ||||||||||||||||||||| |||| |  |||||| |||||||||||    
T  36544300 t--tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtct 36544228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 691 - 827
Target Start/End: Complemental strand, 3264589 - 3264453
Alignment:
Q  691 agcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcata 790  Q
    ||||| ||||||||||| || || |||||||||||||| |  ||||||||||||||||||||| || |||| || | ||| |||||||| |||| | |||    
T  3264589 agcaaagtttgtatgatgggaatatggggaatgggtgggttgggtaaaacaaccacagccaaagccgtctacaaccaaatccatcgcaaatttgaggata 3264490  T
Q  791 gaagtttcgttgaaaatatcagagaagcttgtgaaaa 827  Q
     ||||||| | |||||||| ||||||| || ||||||    
T  3264489 aaagtttcatcgaaaatattagagaagtttatgaaaa 3264453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 671 - 822
Target Start/End: Complemental strand, 3288535 - 3288384
Alignment:
Q  671 agtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaat 770  Q
    |||||||| |||| || |||||||| |||||| ||| ||||||||||||||||||||| || || |||||||| ||||||||| | ||||  |||| |||    
T  3288535 agtttattcaaaatcaatcaagcaaagtttgtttgacagggatctggggaatgggtgggtcggggaaaacaacaacagccaaagctatcttcaatcaaat 3288436  T
Q  771 tcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgt 822  Q
    | ||   || ||| |||||  ||||||| |||||||||| ||||||| ||||    
T  3288435 taatttgaaatttatgcatgcaagtttcattgaaaatattagagaagtttgt 3288384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 553 - 766
Target Start/End: Complemental strand, 3400821 - 3400608
Alignment:
Q  553 aatgaaggtgaactagtaaagcaaattgttggtgacgttttcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaacctc 652  Q
    ||||||||||||||||| |||||||||||||  |||  |||  |||||||||| |  |||||  |||||||| | || |  || ||||| |||||  | |    
T  3400821 aatgaaggtgaactagtgaagcaaattgttgaggacactttggcaaaactagatatctcattgttgtctattactgaatatccggttggattggattccc 3400722  T
Q  653 gtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaa 752  Q
    |||||||| || || || ||||||||||  | || ||||   | || |||||||||||||| ||||||||||||||||| || ||||||||||| |||||    
T  3400721 gtgtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgatagggatatggggaatgggtggatccgggaaaacaaccacggccaa 3400622  T
Q  753 atccatctataatc 766  Q
    | | ||||| ||||    
T  3400621 agctatctacaatc 3400608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 673 - 751
Target Start/End: Original strand, 13806935 - 13807013
Alignment:
Q  673 tttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagcca 751  Q
    |||||| |||| || |||||||| |||||  |||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  13806935 tttattaaaaatcaatcaagcaaagtttgcttgatagggatctgggggatgggtggatcaggtaaaacaacaacagcca 13807013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 674 - 771
Target Start/End: Original strand, 13785638 - 13785735
Alignment:
Q  674 ttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaatt 771  Q
    |||||||||| || |||| |||||||||    || ||||||||||| ||||||||||| || |||||||||||||||||| ||||||| |||| ||||    
T  13785638 ttattgaaaatcaatcaaacaatgtttgctctatggggatctggggtatgggtggatcggggaaaacaaccacagccaaagccatctacaatcaaatt 13785735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 676 - 776
Target Start/End: Complemental strand, 3409395 - 3409295
Alignment:
Q  676 attgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatc 775  Q
    ||||| ||||||||  || ||||||||||| ||||||||||||| ||||| ||||| |||||||||||   ||||||| ||||||| |||  ||||||||    
T  3409395 attgagaaacattcgggcgatgtttgtatggtagggatctggggcatgggaggatcaggtaaaacaactgtagccaaagccatctacaatgaaattcatc 3409296  T
Q  776 g 776  Q
    |    
T  3409295 g 3409295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 6184887 - 6184827
Alignment:
Q  145 ttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    |||||||||||||||||||| ||||| ||||||||||||||  ||| |||||| |||||||    
T  6184887 ttctccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatca 6184827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 11130955 - 11131029
Alignment:
Q  108 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttt 182  Q
    ||||||||||||||||||    ||||||||||||| ||| ||||||||||||||||| |  ||||||| ||||||    
T  11130955 tttccacaaaatctctctgaaaactttatcatacgccttatccaaatcaatgaaaactagatgcaagtatttttt 11131029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 25984788 - 25984734
Alignment:
Q  134 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccat 188  Q
    ||||||| | |||||||||||||||| |||||||||||||||| |||| ||||||    
T  25984788 tatcatatgccttctccaaatcaatggaaaccaagtgcaagtccttttgatccat 25984734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 41445401 - 41445452
Alignment:
Q  244 cataaaaccaaattggttatcagtaaatcaagtctcttttcttagtctccat 295  Q
    ||||||||||||||||||| | |||| || ||| ||||||||||||||||||    
T  41445401 cataaaaccaaattggttagccgtaactcgagtgtcttttcttagtctccat 41445452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 30815 - 30544
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  |||||||||    |||||||||||||||||||    
T  30815 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttcttcggggctttccacaaaatctctc 30716  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 216  Q
    | | |||| ||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||| ||  |||||| | |||||      ||  |||||||||    
T  30715 tcggtactctatcatacgccttttccaattcaatgaaaactaagtgcaagtcttttttatccgtctgatatcgcttcatcacgcgttgaagtaagtagat 30616  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  30615 --tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 30544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 3e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 27 - 291
Target Start/End: Original strand, 5260184 - 5260454
Alignment:
Q  27 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctct 125  Q
    ||||||||||||||||||||| |||||||||||| |  ||||||| ||||||| ||||| | |||  |||||| | ||  ||||||||| ||||||||||    
T  5260184 tcctcacactagttgaagctccctcatacatatcctatatagctctaatataagcaatcatcacccctttcttttctagggctttccactaaatctctct 5260283  T
Q  126 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcag--------ataagtagatc 217  Q
    || |||| ||||||||| |||||||||||| |||||||| ||||| ||||||||||||||| ||| |||||| ||||||||        ||||  ||||     
T  5260284 aggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcaggcgtcgaaataaagagat- 5260382  T
Q  218 acgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
     |||||||||| | |||||||| | |||||||||||||||||||||| ||||    |||||||||||| |||||    
T  5260383 -cgcttccataatcgacctccc-atacataaaaccaaattggttatccgtaacgtgagtctcttttctaagtct 5260454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 9706122 - 9705943
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| | || ||||| ||| ||  ||||| | |||  ||||||||  |  |||||||||||||||||||    
T  9706122 gtcctcacactagtcgaagctccctcatacatatcctggaaagctctaatttaggcaatcctcacccctttcttctacagggctttccacaaaatctctc 9706023  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatc 204  Q
    ||| |||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||| ||||||    
T  9706022 taggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatc 9705943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 6082747 - 6082575
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| ||||||| || ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  6082747 gtcctcacactagtcgaagctccctcatacatatccttgatagttctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctc 6082648  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcg 197  Q
    | | |||| ||||||||  ||| ||||||||||||||||| ||||||||||| ||||||||| ||| ||||||    
T  6082647 tcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcg 6082575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 20428573 - 20428752
Alignment:
Q  27 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 125  Q
    ||||||||||||| ||||||| | |||||||||| | |||||||| ||||||  ||||| | |||  ||||||||  |  ||||||||||||||||||||    
T  20428573 tcctcacactagtcgaagctcccacatacatatcctggatagctctaatataggcaatcctcacccctttcttctccagggctttccacaaaatctctct 20428672  T
Q  126 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    || |||| ||||||||| ||||| ||||||||||||||| | ||| ||||||||||||||| ||| |||||| |||||||    
T  20428673 aggtactctatcatacgccttctacaaatcaatgaaaactaggtgtaagtcttttttatccgtccgatatcgctccatca 20428752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 30670234 - 30670061
Alignment:
Q  27 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 125  Q
    |||||||||||||  || ||| || ||||||||| | |||||||| ||||||  |||||||||||| ||||||||| |   |||||||||||||||||||    
T  30670234 tcctcacactagtcaaaactcccttatacatatcctggatagctctaatataggcaatcttaacctctttcttcttcaggactttccacaaaatctctct 30670135  T
Q  126 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    ||      ||||| ||| ||||||||||||||||||||| ||||| ||||||||||| ||  ||| |||||| |||||||    
T  30670134 ag------tatcaaacgccttctccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatca 30670061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 108 - 287
Target Start/End: Complemental strand, 3629530 - 3629346
Alignment:
Q  108 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga 207  Q
    |||||||||||||||  ||| |||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||| |   ||| |||||| ||||||| |    
T  3629530 tttccacaaaatctccataggtactttatcatacgccttcttcaaatcaatgaaaactaagtgtaagtcttttttgtttgtccgatatcgctccatcata 3629431  T
Q  208 --------taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttctta 287  Q
            |||||||||||   |||||| || ||||| ||||| ||||||| ||||||| ||||| |||| || ||||||||||||||    
T  3629430 cgccgaagtaagtagatca--tttccattgtcgacct-ccaaagcataaaatcaaattgattatccgtaactcgagtctcttttctta 3629346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 2681480 - 2681529
Alignment:
Q  134 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttta 183  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  2681480 tatcatacgccttctccaaatcaatgaaaactaagtgcaagtatttttta 2681529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 2208419 - 2208496
Alignment:
Q  107 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttat 184  Q
    ||||||| ||| |||||||||  | | ||||||||  ||||||||||||||||||||| |||| |||||| |||||||    
T  2208419 ctttccaaaaagtctctctagacattctatcatacaccttctccaaatcaatgaaaactaagtacaagtcgtttttat 2208496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 52138175 - 52137995
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  52138175 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctc 52138076  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    | | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||  ||| |||||| |||||||    
T  52138075 tcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatca 52137995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 51448644 - 51448915
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctc 124  Q
    |||||||||| ||| ||||||| |||||||||||| |||||||| | ||||||  ||| | |||||  ||||||||    | ||||||||||||||||||    
T  51448644 gtcctcacaccagtcgaagctccctcatacatatccttgatagccctaatataggcaaacctaacccctttcttctcccgggctttccacaaaatctctc 51448743  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 216  Q
    | | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  ||| |||||    
T  51448744 tcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaaatagat 51448843  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       ||||||||||| |||||||| |   |||||||||||||||||||| |||| || |||||| |||||||||||    
T  51448844 --tgcttccatagtcgacctccc-aggtataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 51448915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 697 - 834
Target Start/End: Complemental strand, 32413020 - 32412883
Alignment:
Q  697 gtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtt 796  Q
    ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| |||||||||||| |||  ||||||| ||||   ||||||| |    
T  32413020 gtttgcatgatagggatttggggaatggggggatcaggtaaaacaaccacagcaaaagccatctataatcaaatcaatcgcaaatttgcagatagaagct 32412921  T
Q  797 tcgttgaaaatatcagagaagcttgtgaaaatgataat 834  Q
    || ||||||| || ||||||   |||||||| ||||||    
T  32412920 tcattgaaaacattagagaaatctgtgaaaaggataat 32412883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 9258235 - 9258095
Alignment:
Q  24 gtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccacaaaatctct 123  Q
    ||||||||||| |||| |||||||||||||||||||| || ||||||| |||||| |||||| ||||| |||  |    |  |||||||| |||||||||    
T  9258235 gtgtcctcacaatagtcgaagctctctcatacatatcgtttatagctctaatatagacaatcctaaccctttattatccagagctttccataaaatctct 9258136  T
Q  124 ctagctactttatcatacgtcttctccaaatcaatgaaaac 164  Q
    ||||  | ||||||||| |  ||||||||||||||||||||    
T  9258135 ctaggaattttatcatatgcgttctccaaatcaatgaaaac 9258095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 707 - 809
Target Start/End: Complemental strand, 6907891 - 6907789
Alignment:
Q  707 tagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaa 806  Q
    ||||||| ||||||||||| || |  |||||||| ||||||||||||  |||||| |||  |||||||||||| |||||||||||||||||| |||| ||    
T  6907891 tagggatttggggaatgggcgggttgggtaaaactaccacagccaaaggcatctacaataaaattcatcgcaaatttgtgcatagaagtttcattgagaa 6907792  T
Q  807 tat 809  Q
    |||    
T  6907791 tat 6907789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 38849441 - 38849288
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| ||||||  ||||| |||||  |||||||| ||  ||||        |||||||    
T  38849441 gtcctcacactagtcgaagctccctcatacatatccttgatagctctaatataggcaatcataacccctttcttctatagggctt--------atctctc 38849350  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcc 186  Q
    ||   ||| |||| |||| ||||||||||||||||||||| ||||| |||| ||||||||||    
T  38849349 tacaaactctatcttacgccttctccaaatcaatgaaaactaagtgtaagtgttttttatcc 38849288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 48221047 - 48220971
Alignment:
Q  106 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttt 182  Q
    |||||||| ||||| |||||||  | | |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  48221047 gctttccataaaatatctctaggcaatctatcatacgttttctccaaatcaatgaaaactaagtgcaagtctttttt 48220971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 50630373 - 50630418
Alignment:
Q  144 cttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatc 189  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  50630373 cttctccaaatcaatgaaaactaagtgcaagtcttttttatccatc 50630418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 19736564 - 19736502
Alignment:
Q  24 gtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatct 86  Q
    ||||||||| |||||| ||||||| |||||||||||| |||||||||| || |||||||||||    
T  19736564 gtgtcctcatactagtcgaagctccctcatacatatccttgatagctctaacataaacaatct 19736502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 19757382 - 19757320
Alignment:
Q  24 gtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatct 86  Q
    ||||||||| |||||| ||||||| ||| |||||||| |||||||||| || |||||||||||    
T  19757382 gtgtcctcatactagtcgaagctccctcgtacatatccttgatagctctaacataaacaatct 19757320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 8e-36; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 24177871 - 24177600
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| ||||||  ||||  |||||  ||||||||  |  |||||||||||||||||||    
T  24177871 gtcctcacactagtcgaagctccctcatacatatccttgatagctctaatataggcaatgctaacccctttcttctccagggctttccacaaaatctctc 24177772  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 216  Q
    | | |||| ||||||| | ||| | ||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||    
T  24177771 tcggtactctatcatatgcctttttcaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcatgcgtcgaagtaagtagat 24177672  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       |||||| |||| ||||| || |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  24177671 --tgcttccgtagtcgaccttcc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 24177600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 20318338 - 20318067
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 124  Q
    |||||||||||||| ||| ||| |||||||||||| ||||||||   ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  20318338 gtcctcacactagtcgaaactccctcatacatatccttgatagccataatataggcaatcctaacccctttcttctccagggctttccacaaaatctctc 20318239  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 216  Q
      | |||| ||||||||| ||| ||||||| ||||||||| ||||||||||||| ||||||| ||| |||||| |||||||      ||  |||||||||    
T  20318238 ccggtactctatcatacgccttttccaaattaatgaaaactaagtgcaagtcttatttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat 20318139  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  20318138 --tgcttccatagtcgacctccc-aggcataaaaccaaattggttatctgtaactcgagtctcctttcttagtct 20318067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 2076409 - 2076680
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||    |||||  ||||| |||||  ||  |||| ||  |||| ||||||||||||||    
T  2076409 gtcctcacactagtcgaagctccctcatacatatccttgatagccatgatataggcaatcctaaccccttatttctctagggcttgccacaaaatctctc 2076508  T
Q  125 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatc--------agataagtagat 216  Q
    | | |||| ||||||||| ||| ||||||||||||||||  ||||||||||||||||||||| ||| |||||| ||||||        |  |||||||||    
T  2076509 tcggtactctatcatacgccttttccaaatcaatgaaaattaagtgcaagtcttttttatccgtccgatatcgctccatcccgcgtcgaagtaagtagat 2076608  T
Q  217 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
       ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  2076609 --tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 2076680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 676 - 826
Target Start/End: Original strand, 30415929 - 30416079
Alignment:
Q  676 attgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatc 775  Q
    ||||||||  ||||||  || |||||||||||||| || ||||||||||| || |  |||||||| ||  |||||||| ||||||| |||| ||||||||    
T  30415929 attgaaaataattcaacaaaggtttgtatgataggcatatggggaatgggagggttgggtaaaactacggcagccaaagccatctacaatcaaattcatc 30416028  T
Q  776 gcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaa 826  Q
    |||| |||||| | ||||||||| | |||||||| |||||| |||||||||    
T  30416029 gcaaatttgtgtacagaagtttcatcgaaaatattagagaaacttgtgaaa 30416079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 27196 - 27039
Alignment:
Q  134 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga--------taagtagatcacgcttcc 225  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||| | | |||||| | ||||| |        |||||||||  |||||||    
T  27196 tatcattcgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgcttcatcacacgttgaagtaagtagat--cgcttcc 27099  T
Q  226 atagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttctta 287  Q
    ||||| || || |  || |||||||||||| ||||||||||||| |||||||| ||||||||    
T  27098 atagtcgatcttc--aagcataaaaccaaaatggttatcagtaactcaagtcttttttctta 27039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 17212533 - 17212459
Alignment:
Q  107 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttt 181  Q
    ||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||| | ||||||||||| ||||    
T  17212533 ctttccataaaatctctctaggcactttatcatacgtcttcttcaaatcaatgaaatctaagtgcaagtcatttt 17212459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 550 - 753
Target Start/End: Original strand, 20836335 - 20836538
Alignment:
Q  550 aggaatgaaggtgaactagtaaagcaaattgttggtgacgttttcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaac 649  Q
    ||||||||||||||||||||  ||| ||||||||  ||| |||| | ||||||||| |  |||||  |||||||| | || || ||  |||| ||||||     
T  20836335 aggaatgaaggtgaactagtggagctaattgttgaggacattttgagaaaactagatatctcattgttgtctattactgaatttccgattggattggaat 20836434  T
Q  650 ctcgtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagc 749  Q
    | | ||||||| || || || || |||||||  | || ||| |||| || ||||| |||||||| ||||||||||||||||  || ||||||||||| ||    
T  20836435 cccatgtgcaacaaattaccaagattattgatgatcaatcatgcaaagtctgtatcatagggatatggggaatgggtggattaggcaaaacaaccacggc 20836534  T
Q  750 caaa 753  Q
    ||||    
T  20836535 caaa 20836538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 3301196 - 3301095
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 124  Q
    |||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||  ||||| | |||  ||||||||  |  |||||||||||||||||||    
T  3301196 gtcctcacactagtcgaagctccctcatacatatcatggataactctaatataggcaatcctcacccctttcttctccaaagctttccacaaaatctctc 3301097  T
Q  125 ta 126  Q
    ||    
T  3301096 ta 3301095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 37123836 - 37123755
Alignment:
Q  107 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccat 188  Q
    |||| |||||||||||| |||  ||| ||||||||   |||||||||||||||||||| |||||||  ||||||||||||||    
T  37123836 ctttacacaaaatctctttaggaactctatcatacagtttctccaaatcaatgaaaactaagtgcacatcttttttatccat 37123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 550 - 753
Target Start/End: Original strand, 20809980 - 20810183
Alignment:
Q  550 aggaatgaaggtgaactagtaaagcaaattgttggtgacgttttcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaac 649  Q
    |||||||||||||||||||| |||   |||||||   || |||| ||||||||| | |  |||||  |||||||| | || |  ||| |||| ||||||     
T  20809980 aggaatgaaggtgaactagtgaagggtattgttgagtacattttgacaaaactaaatatctcattgttgtctattactgaatatccaattggattggaat 20810079  T
Q  650 ctcgtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagc 749  Q
    | ||||||||| || || || || |||||||  | || ||| | || || ||||| |||||||| ||||||||||||||||| || ||||||||||| ||    
T  20810080 cccgtgtgcaacaaattaccaagattattgatgatcaatcatggaaagtctgtatcatagggatatggggaatgggtggatcaggcaaaacaaccacggc 20810179  T
Q  750 caaa 753  Q
    ||||    
T  20810180 caaa 20810183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 30418662 - 30418593
Alignment:
Q  108 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctt 178  Q
    ||||||||||||||||||||  ||| |||| || ||||||||||||| ||||||||| ||||| |||||||    
T  30418662 tttccacaaaatctctctaggcactctatc-tatgtcttctccaaattaatgaaaactaagtggaagtctt 30418593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 1288524 - 1288589
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacc 91  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||    
T  1288524 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcataacc 1288589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 1274612 - 1274560
Alignment:
Q  26 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatata 78  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||    
T  1274612 gtcctcacactagtcgaagctccctcatacatatctttgatagccctaatata 1274560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 1288687 - 1288734
Alignment:
Q  244 cataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  1288687 cataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 1288734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 7605809 - 7605754
Alignment:
Q  24 gtgtcctcacactagttgaag-ctctctcatacatatcattgatagctccaatata 78  Q
    ||||||| ||||||||  ||| ||||||||||||||||||||||||||| ||||||    
T  7605809 gtgtcctaacactagtcaaagtctctctcatacatatcattgatagctcgaatata 7605754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 25937220 - 25937173
Alignment:
Q  244 cataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    ||||||||||||||||||||||| ||||| |||||| |||| ||||||    
T  25937220 cataaaaccaaattggttatcagaaaatcgagtctcatttcgtagtct 25937173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 31503071 - 31503129
Alignment:
Q  114 caaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgca 172  Q
    |||||||| |||||  | ||||||||| ||||||||||||||||| ||||| |||||||    
T  31503071 caaaatctttctagacaatttatcatatgtcttctccaaatcaataaaaactaagtgca 31503129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 35685088 - 35685042
Alignment:
Q  142 gtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccat 188  Q
    ||||||||||||||||||||||  ||| | |||||||||||||||||    
T  35685088 gtcttctccaaatcaatgaaaattaagcgtaagtcttttttatccat 35685042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 26 - 269
Target Start/End: Original strand, 13191 - 13442
Alignment:
Q  26 gtcctcacactagttgaagctctctcata--catatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctc 122  Q
    |||||||||||||| ||||||| ||||||  |||||| |||||||||| ||||||  ||||||||||||  |||||||    | ||||||||||||||||    
T  13191 gtcctcacactagtcgaagctccctcatatacatatccttgatagctctaatataggcaatcttaacctcgttcttctccaggactttccacaaaatctc 13290  T
Q  123 tctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtag 214  Q
    |||||  ||| ||||||||| ||||||||||||||||||||| ||||| |||||||| |||||| ||  |||||| |||| ||      ||  |||||||    
T  13291 tctaggaactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtctttattatccgtcatatatcgctccaccacgcgtcgaagtaagtag 13390  T
Q  215 atcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaa 269  Q
    ||  || ||||||||| |||||||| || ||||||||||||||||||||| ||||    
T  13391 at--cgtttccatagtcgacctccc-aagcataaaaccaaattggttatccgtaa 13442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 134 - 291
Target Start/End: Original strand, 90134 - 90296
Alignment:
Q  134 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga--------taagtagatcacgcttcc 225  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| ||| || || | || |        |||||||||||  |||||    
T  90134 tatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgataacgctcgaccacatgtcgaattaagtagatca--cttcc 90231  T
Q  226 atagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 291  Q
    ||||||||||||||    ||||||| ||||||||||||| |||| || ||||||||||||||||||    
T  90232 atagttgacctccc-tggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtct 90296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 5778 - 5614
Alignment:
Q  44 gctctctcatacat--atcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcata 140  Q
    ||||||||||||||  ||| |||||||||| |||||| | |||| ||||| |||||||||  |  | |||||| |||||||||| |   ||| |||||||    
T  5778 gctctctcatacatgtatccttgatagctctaatatacataatcctaacccttttcttctccagagttttccataaaatctctcgacacactatatcata 5679  T
Q  141 cgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 205  Q
    || ||||||||||| ||||||||| |||||| | | |||||||||  || ||||||| |||||||    
T  5678 cgccttctccaaataaatgaaaactaagtgcgattgttttttatcagtcaaatatcgctccatca 5614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 518 - 595
Alignment:
Q  107 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttat 184  Q
    ||||||| ||| |||||||||  | | ||||||||  ||||||||||||||||||||| |||| |||||| |||||||    
T  518 ctttccaaaaagtctctctagacattctatcatacaccttctccaaatcaatgaaaactaagtacaagtcgtttttat 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 795
Target Start/End: Complemental strand, 8316 - 8209
Alignment:
Q  688 tcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgc 787  Q
    |||||||| ||||  ||| ||||||||||||| ||||| || |  |||||||| |||| |||||||    |||| |||  |||||||| |||||||||||    
T  8316 tcaagcaaagtttccatggtagggatctggggcatgggcgggttgggtaaaactaccatagccaaaggtgtctacaataaaattcatcacaagtttgtgc 8217  T
Q  788 atagaagt 795  Q
    ||||||||    
T  8216 atagaagt 8209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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