View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3405_low_2 (Length: 549)
Name: NF3405_low_2
Description: NF3405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3405_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 35408365 - 35407833
Alignment:
| Q |
1 |
aatttgagagagactgaactcgttcatcacttcaattgatggatcccacacacttattgatgcttttgcaccgtagatctcttgtgatgatcctgtgtat |
100 |
Q |
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| T |
35408365 |
aatttgagagagactgaactcgttcatcacttcaattgatggatcccacacacttattgatgcttttgcaccgtagatctcttgtgatgatcctgtgtac |
35408266 |
T |
|
| Q |
101 |
gcgatcgcatgctgcacacgaacaaattttattttaattatttgagtacatataattagtgcaaagtcttcttccatcagaaatagtaaattactaatat |
200 |
Q |
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| T |
35408265 |
gcgatcgcatgctgcacacgaacaaattttattttaattatttgagtacatataattagtgcaaagtcttcttccatcagaaatagtaaattactaatat |
35408166 |
T |
|
| Q |
201 |
tat---gattnnnnnnncatttgtcaaatcacaacaatgtttaacaaagtttaagagtgtaagaaaagataatataacttgaagtacaaataaagcaatc |
297 |
Q |
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| T |
35408165 |
tattatgattaaaaaaacatttgtcaaatcacaacaatgtttaacaaagtttaagagtgtaagaaaagataatataacttgaagtacaaataaagcaatc |
35408066 |
T |
|
| Q |
298 |
ttgattacattcaattctcaaattaaaaatttattaaaacgattcggtgtcaagttgaattgcaactttatagagtgatgaaaagaaaaattgatcttgt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35408065 |
ttgattacattcaattctcaaattaaaaatttattaaaacgattcggtgtcaagttgaattgcaactttatagagtgatgaaaagaaaaattgatcttgt |
35407966 |
T |
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| Q |
398 |
tgacattttaatataatgagaagataacaacttgaagtttaattaaggatcagccagaatcatttgcaagctagatctatctgtgaaagttacattttgc |
497 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35407965 |
tgacattttaatataatgggaagataacaacttgaagtttaattgaggatcaaccagaatcatttgcaagctagatctatctgtgaaagttacattttgc |
35407866 |
T |
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| Q |
498 |
atcaaattttatactattttaacccttgcattc |
530 |
Q |
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| T |
35407865 |
atcaaattttatactattttaacccttgcattc |
35407833 |
T |
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