View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3405_low_3 (Length: 438)

Name: NF3405_low_3
Description: NF3405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3405_low_3
NF3405_low_3
[»] chr2 (6 HSPs)
chr2 (11-289)||(36541869-36542147)
chr2 (243-420)||(36542148-36542325)
chr2 (80-252)||(32689033-32689205)
chr2 (216-342)||(15692408-15692535)
chr2 (331-376)||(33782479-33782525)
chr2 (166-258)||(32007698-32007790)
[»] chr8 (1 HSPs)
chr8 (292-376)||(22449703-22449787)
[»] chr6 (1 HSPs)
chr6 (285-405)||(22505391-22505508)
[»] chr1 (1 HSPs)
chr1 (90-127)||(31343711-31343748)
[»] chr4 (2 HSPs)
chr4 (285-371)||(35189550-35189637)
chr4 (87-128)||(15871350-15871391)
[»] chr3 (1 HSPs)
chr3 (91-136)||(16999692-16999737)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 36541869 - 36542147
Alignment:
Q  11 cagagatcaaccaccttgatagaaaataaatatcacatgaattacatttttcacctttttgtagaccacattggactttggtgtcttcataaaagttata 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  36541869 cagagatcaaccaccttgataggaaataaatatcacatgaattacatttttcacctttttgtaggccacattggactttggtgtcttcataaaagttcta 36541968  T
Q  111 gatatggatgttatctttcatgttccactgttccttatccattttatgacctggaactccatatatgattaaaacaccgcacaaacttcacgtagagatc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36541969 gatatggatgttatctttcatgttccactgttccttatccattttgtgacctggaactccatatatgattaaaataccgcacaaacttcacgtagagatc 36542068  T
Q  211 aacatgcctcactcattttcttttactcttttccccatttctcttcactgtaacaatcgtgatggatatactacaagag 289  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36542069 aacatgcctcactcgttttcttttactcttttccccatttctcttcactgtaacaatcgtgatggatatactacaagag 36542147  T

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Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 243 - 420
Target Start/End: Original strand, 36542148 - 36542325
Alignment:
Q  243 ccccatttctcttcactgtaacaatcgtgatggatatactacaagagacaacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggtt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||    
T  36542148 ccccatttctcttcactgtaacaatcgtgatggatatactacaagagacaacttgattgttcttgtaaaaaacatagcacaaccattgagttgtctggtt 36542247  T
Q  343 aggtgaattcgagctagtttcaaggtcttctttgtatatttttagtatagtgttaatttcttcggttctagctaaact 420  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  36542248 aggtgaattcgagccagtttcaaggtcttctttgtatatttttagtacagtgttaatttcttcagttctagctaaact 36542325  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 252
Target Start/End: Original strand, 32689033 - 32689205
Alignment:
Q  80 attggactttggtgtcttcataaaagttatagatatggatgttatctttcatgttccactgttccttatccattttatgacctggaactccatatatgat 179  Q
    ||||||||||||||||| ||| |||||  | ||||||||||| |  |||||| ||||||||  |  | |||||| |  | |||  |||| ||||||||||    
T  32689033 attggactttggtgtctgcatgaaagtgttggatatggatgtgaaatttcatattccactggcctatctccattatgagtcctacaacttcatatatgat 32689132  T
Q  180 taaaacaccgcacaaacttcacgtagagatcaacatgcctcactcattttcttttactcttttccccatttct 252  Q
    ||||||||||||||||   || |||||||||| |||||||||||  | |||||| ||||||||  ||||||||    
T  32689133 taaaacaccgcacaaataacatgtagagatcagcatgcctcactagtgttctttcactcttttttccatttct 32689205  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 216 - 342
Target Start/End: Original strand, 15692408 - 15692535
Alignment:
Q  216 gcctcactcattttcttttactcttttccccatttctcttcactgtaacaatcgtgatggatatactac-aagagacaacttgattgttcttttaaaaaa 314  Q
    |||| |||||| ||||||||||||||||||| |||||||||| | ||||    ||||||| |||||| | || |||||||||||||| |||| ||||||     
T  15692408 gccttactcatattcttttactcttttccccgtttctcttcattttaacgtctgtgatggctatactccaaatagacaacttgattgctcttgtaaaaat 15692507  T
Q  315 catagcacgaccactgagttgtctggtt 342  Q
    ||||||| ||||   |||||||||||||    
T  15692508 catagcatgaccgaggagttgtctggtt 15692535  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 33782479 - 33782525
Alignment:
Q  331 agttgtctggttagg-tgaattcgagctagtttcaaggtcttctttg 376  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||    
T  33782479 agttgtatggttagggtgaatttgagctagtttcaaggtcttctttg 33782525  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 32007790 - 32007698
Alignment:
Q  166 actccatatatgattaaaacaccgcacaaact-tcacgtagagatcaacatgcctcactcattttcttttactcttttccccatttctcttcac 258  Q
    ||||||||||||||||||  |||||| |||   ||| ||||||||||| | |||||  |||| ||||||| |||||||||| ||||||||||||    
T  32007790 actccatatatgattaaat-accgcaaaaaaagtcatgtagagatcaaaacgcctcgatcatgttcttttcctcttttcccaatttctcttcac 32007698  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 376
Target Start/End: Original strand, 22449703 - 22449787
Alignment:
Q  292 aacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggttaggtgaattcgagctagtttcaaggtcttctttg 376  Q
    |||||||||| |||  |||||| | |||||| ||||| ||||||| |||||||||||||| ||||  ||||||||||||||||||    
T  22449703 aacttgattgatctagtaaaaaccttagcaccaccacagagttgtttggttaggtgaatttgagccggtttcaaggtcttctttg 22449787  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 22505508 - 22505391
Alignment:
Q  285 aagagacaacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggtta-ggtgaattcgagctagtttcaaggtcttctttgtatattt 383  Q
    |||||||||||| |||| |||| |||||| ||||||||||| |  |||||||||||||| |||||||||||||  |||||||  | | ||| ||||||||    
T  22505508 aagagacaacttcattgctcttgtaaaaagcatagcacgacta--gagttgtctggttagggtgaattcgagccggtttcaa--tgtacttcgtatattt 22505413  T
Q  384 ttagtatagtgttaatttcttc 405  Q
    | |||  | |||||||||||||    
T  22505412 tgagtgcaatgttaatttcttc 22505391  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 31343748 - 31343711
Alignment:
Q  90 ggtgtcttcataaaagttatagatatggatgttatctt 127  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  31343748 ggtgtcttcatgaaagttatagatatggatgttatctt 31343711  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 35189637 - 35189550
Alignment:
Q  285 aagagacaacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggtta-ggtgaattcgagctagtttcaaggtctt 371  Q
    ||||||| ||||||||  |||||||||||  |||||||||||||  |||||| |||||| ||||||||||| |   ||||||||||||    
T  35189637 aagagaccacttgatttctcttttaaaaagtatagcacgaccacacagttgtatggttagggtgaattcgatccgatttcaaggtctt 35189550  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 15871350 - 15871391
Alignment:
Q  87 tttggtgtcttcataaaagttatagatatggatgttatcttt 128  Q
    ||||||||||||||||||||| |||||||| |||||| ||||    
T  15871350 tttggtgtcttcataaaagttgtagatatgcatgttagcttt 15871391  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 16999692 - 16999737
Alignment:
Q  91 gtgtcttcataaaagttatagatatggatgttatctttcatgttcc 136  Q
    |||||||||| |||||| |||||||| |||||||||||||| ||||    
T  16999692 gtgtcttcatgaaagttgtagatatgaatgttatctttcattttcc 16999737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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