View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3405_low_4 (Length: 402)
Name: NF3405_low_4
Description: NF3405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3405_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 235685 - 235421
Alignment:
| Q |
9 |
gacatcatcacacccgaagacagagaaacaataagaccaccatcctcactcgatggccatgtcgtcagccacttcaatcctaaaaaagtggtcgctgtca |
108 |
Q |
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| T |
235685 |
gacatcatcacacccgaagacagagaaacaataagaccaccgtcctcacccgatggccatgtcgtcagccacttcaatcctaaaatagtggtcgctgtca |
235586 |
T |
|
| Q |
109 |
tgtcccatggaaaaaa-ccctatcattgtcggctcattgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattc |
207 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
235585 |
tgtcccatggaaaaaaaccctatcattgtcggctcgttgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattc |
235486 |
T |
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| Q |
208 |
ctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaa |
272 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
235485 |
ctggaatgtcggcctatttaggagacatccgtgttttcaaaggccagccttatgtggttgataaa |
235421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 115 - 388
Target Start/End: Original strand, 8814023 - 8814299
Alignment:
| Q |
115 |
atggaaaaaaccctatcattgtcggctcattgaactgtactggagaagaacca---gtagtgttgaaatgtggcgatgagaattggaaacttattcctgg |
211 |
Q |
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| T |
8814023 |
atggaaataaacctatcatcgtcgcctcatttaactgtaaaggagaagaacaactggtagtgttcaaatgcggcgatgagaattggaagtttattcctga |
8814122 |
T |
|
| Q |
212 |
aatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaaactgggcggactgttactgtttgtcctgatgattccact |
311 |
Q |
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| T |
8814123 |
aatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaaaactggacagactgttactgttggaccggatgactcaact |
8814222 |
T |
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| Q |
312 |
gtccggttagttgctgtatctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
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|| | |||||| |||| ||||||| ||| ||| ||||||||||||||| ||||||||||| | |||||||||||||| |
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| T |
8814223 |
gttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagtggagagcaagggtgatttgttgtt |
8814299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 158 - 388
Target Start/End: Complemental strand, 247267 - 247034
Alignment:
| Q |
158 |
agaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagcct |
257 |
Q |
| |
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|||| |||||| | |||||||||| || |||||||||||||| ||| ||| ||||||| ||||||||||||||| ||||||||||||||| ||| |
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| T |
247267 |
agaacaaccagcattgttgaaatgcggtgatgagaattggaaggctatacctcacatgtcggtttatttaggagacatttgtgttttcaaaggccgacct |
247168 |
T |
|
| Q |
258 |
tatgtggttgataaaactgggcggactgttactgtttgtcctga---tgattccactgtccggttagttgctgtatctttggttggtggtggggatatta |
354 |
Q |
| |
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|||| ||| || |||||||| |||| ||| || | || || |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
247167 |
tatgcggtagacaaaactggatggacagttggatttggaccggaggatgattccactgtccggttagttgctgaatctttggttggtggtggagatatta |
247068 |
T |
|
| Q |
355 |
aattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
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||||||||||||||||| | |||||||||||||| |
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| T |
247067 |
aattcttagtggagagcaagggtgatttgttgtt |
247034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 165 - 388
Target Start/End: Original strand, 251114 - 251343
Alignment:
| Q |
165 |
ccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtgg |
264 |
Q |
| |
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||||||||||| ||||| || |||||||||||||| ||| ||| |||||||| ||||| ||||||||| ||||||||||||||| ||||||| || |
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| T |
251114 |
ccagtagtgttcaaatgcggtgatgagaattggaaggctatacctaacatgtcggcttattttggagacatttgtgttttcaaaggccgaccttatgcgg |
251213 |
T |
|
| Q |
265 |
ttgataaaactgggcggactgttactgttt------gtcctgatgattccactgtccggttagttgctgtatctttggttggtggtggggatattaaatt |
358 |
Q |
| |
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| || || ||||| ||||| ||||||||| | ||||| ||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||| |
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| T |
251214 |
tagacaatactggacggacagttactgttgaacttggacctgaggattccactgtccagttagtggctcaatctttggttggtggtggagatattaaatt |
251313 |
T |
|
| Q |
359 |
cttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
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||| |||||||||||| ||||||||||||| |
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| T |
251314 |
cttggtggagagcgacagtgatttgttgtt |
251343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 388
Target Start/End: Complemental strand, 235424 - 235389
Alignment:
| Q |
353 |
taaattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
235424 |
taaattcttagtggagagcgacggtgatttgttgtt |
235389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 9171054 - 9170984
Alignment:
| Q |
318 |
ttagttgctgtatctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
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|||||||||| | ||||||||||||||||| | || |||||||||||||||||||| || ||||||||||| |
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| T |
9171054 |
ttagttgctgaacctttggttggtggtgggaacatgaaattcttagtggagagcgagggagatttgttgtt |
9170984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 9159374 - 9159444
Alignment:
| Q |
318 |
ttagttgctgtatctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
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||||| |||| | ||||||||||||||||| | || |||||||||||||||||||| || ||||||||||| |
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| T |
9159374 |
ttagtggctgaacctttggttggtggtgggaacataaaattcttagtggagagcgagggagatttgttgtt |
9159444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 7013072 - 7013002
Alignment:
| Q |
318 |
ttagttgctgtatctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
|
||||| |||| | ||||||||||||| ||||| || |||||||||||||||||||| | ||||||||||| |
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| T |
7013072 |
ttagtggctgaacctttggttggtggcggggacatgaaattcttagtggagagcgaggaggatttgttgtt |
7013002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 388
Target Start/End: Complemental strand, 7030052 - 7029995
Alignment:
| Q |
331 |
ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
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|||||||||||||||| || | |||||||||||||||||||| || ||||||||||| |
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| T |
7030052 |
ctttggttggtggtggaaatgtgaaattcttagtggagagcgagggggatttgttgtt |
7029995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 212966 - 213021
Alignment:
| Q |
333 |
ttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
|
||||||| |||||| | || |||||||||||||||||||| |||||||||||||| |
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|
| T |
212966 |
ttggttgatggtggaggcatgaaattcttagtggagagcgagggtgatttgttgtt |
213021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 7026008 - 7025938
Alignment:
| Q |
318 |
ttagttgctgtatctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
|
||||| |||| | ||||| |||| || ||||| || |||||||||||||||||||| || ||||||||||| |
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| T |
7026008 |
ttagtggctgaacctttgattggcggcggggacatgaaattcttagtggagagcgagggggatttgttgtt |
7025938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 33541907 - 33541825
Alignment:
| Q |
306 |
tccactgtccggttagttgctgtatctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
|
|||||||| | |||||| |||| |||||||||||||||||| || | |||||||||||||||||| | |||||||||||||| |
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| T |
33541907 |
tccactgttcagttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgtt |
33541825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 388
Target Start/End: Original strand, 9494619 - 9494769
Alignment:
| Q |
241 |
ttttcaaaggccagccttatgtggttgataaaactgggcggactgttactgtttgtcctgatgattccactgtccggttagttgctgtatctttggtt-- |
338 |
Q |
| |
|
|||||||||| | |||||||||||| | |||||||| ||||| | |||| || | | ||||| | |||| || |||||| |||| |||||||||| |
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| T |
9494619 |
ttttcaaagggcggccttatgtggtacacaaaactggacggacagctactcttggactggatgacttcactttcgagttagtggctgaatctttggtttc |
9494718 |
T |
|
| Q |
339 |
-ggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
388 |
Q |
| |
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||||| ||||| || ||||||||||| ||||| ||||||||||||||||| |
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| T |
9494719 |
tggtgggggggacatcaaattcttagtcgagagtgacggtgatttgttgtt |
9494769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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