View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3405_low_5 (Length: 277)
Name: NF3405_low_5
Description: NF3405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3405_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 35243012 - 35242757
Alignment:
| Q |
17 |
ataaagatatcagtttcttgtgaagtcttgctctaacaaactcactattaattctaccttagttccccatctttccattaatcttgttcatcttccttta |
116 |
Q |
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| T |
35243012 |
ataaagatatcagtttcttgtgaagtcttgttctaacaaactcactattaattccaccttagttccccacctttccattaatcttgttcatcttccttta |
35242913 |
T |
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| Q |
117 |
tcaaagatgaacaatccatatctggacccgaaaaatcccaaaaatgaactgtgagtacaatgctgcatgcatgttctatcacttttcttgcgctgctttc |
216 |
Q |
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| T |
35242912 |
tcaaagatgaacaatccatatctggacccgaaaaatcccaaaaatgaactgtgagtacaatgctgcatgcatgttctatcacttttcttgcgctgctttc |
35242813 |
T |
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| Q |
217 |
ttttattttctttcttaaaatgctt------cttatccatataatttatcgtctgt |
266 |
Q |
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| T |
35242812 |
ttttattttctttcttaaaatgcttcttaatcttatccatataatttatcgtctgt |
35242757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 35279409 - 35279327
Alignment:
| Q |
180 |
tgcatgcatgttctatcacttttcttgcgctgctttcttttattttctttcttaaaatgcttcttatccatataatttatcgt |
262 |
Q |
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| T |
35279409 |
tgcatgcatgttctttcaattttcttgcgcaactttcttttattttctttcttaaaatgcttcttatccatataatttatcgt |
35279327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 35272824 - 35272733
Alignment:
| Q |
146 |
gaaaaatcccaaaaatgaactgtgagtacaatgctgcatgcatg----ttctatcacttttcttgcgctgctttcttttattttctttctta |
233 |
Q |
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| T |
35272824 |
gaaaaatcccaaagaagaactgtgagaaaaacgctgcatgcatgcatgttttttcctttttcttgcgctgctttctttcattttgtttctta |
35272733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 35284467 - 35284418
Alignment:
| Q |
199 |
ttttcttgcgctgctttcttttattttctttcttaaaatgcttcttatcc |
248 |
Q |
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| T |
35284467 |
ttttcttgcgctgttttcttttactttctttcttaaacggcctcttatcc |
35284418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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