View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3406_high_4 (Length: 382)
Name: NF3406_high_4
Description: NF3406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3406_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 41313884 - 41314239
Alignment:
| Q |
11 |
cagagactgaaaaagatctttgtctttcaatattgacactcattgatttagccttactagtatacaatttctttacattagaactttgatcctgcattaa |
110 |
Q |
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| T |
41313884 |
cagagactgaaaaagatctttgtctttcaatattgacactcattgatttagccttactagtatacaatttctttacattagaactttgatcctgcattaa |
41313983 |
T |
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| Q |
111 |
cctagccaagcttctcttagcattggctctaaaaggacaatttgaagccaaaaaaccatccactaaatgtaggtaagcttccaagtcatgacaacatgcc |
210 |
Q |
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| T |
41313984 |
cctagccaagcttctcttagcattggctctaaaaggacaatttgaagccaaaaaaccatccactaaatgtaggtaagcttccaagtcatgacaacatgcc |
41314083 |
T |
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| Q |
211 |
atgtcagcatccggcttcaaaaatggagacatcttcgtatccacacgtagctcagatcccacatgagtgtaagccaatggtgttttctcatcaagcatgt |
310 |
Q |
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| T |
41314084 |
atgtcagcatccggcttcaaaaatggagacatcttcgtatccacacgtagctcagatcccacatgagtgtaagccaatggtgttttctcatcaagcatgt |
41314183 |
T |
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| Q |
311 |
caactacaccaccaaagttaaaacttcttaatttttgttcaaactcttcactcaat |
366 |
Q |
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| T |
41314184 |
caactacaccaccaaagttaaaacttcttaatttttgttcaaactcttcactcaat |
41314239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 259
Target Start/End: Complemental strand, 4167807 - 4167605
Alignment:
| Q |
57 |
tttagccttactagtatacaatttctttacattagaactttgatcctgcattaacctagccaagcttctcttagcattggctctaaaaggacaatttgaa |
156 |
Q |
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| T |
4167807 |
tttagccttactagtatacaacttttttacattagcactttgatcttgcattaatctagctaaacttctcttagcattagctctaaatggacaattagat |
4167708 |
T |
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| Q |
157 |
gccaaaaaaccatccactaaatgtaggtaagcttccaagtcatgacaacatgccatgtcagcatccggcttcaaaaatggagacatcttcgtatccacac |
256 |
Q |
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| T |
4167707 |
gccatatacccatccactaaatgtaaataagcctctagatcatgacaacaagctatgtcagcatcgggcttcaagtatggtgacatcttagtattaacac |
4167608 |
T |
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| Q |
257 |
gta |
259 |
Q |
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||| |
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| T |
4167607 |
gta |
4167605 |
T |
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