View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3406_high_7 (Length: 240)

Name: NF3406_high_7
Description: NF3406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3406_high_7
NF3406_high_7
[»] chr3 (3 HSPs)
chr3 (5-223)||(10427981-10428199)
chr3 (67-140)||(42529451-42529524)
chr3 (40-106)||(49972711-49972777)
[»] chr7 (4 HSPs)
chr7 (47-108)||(35451129-35451190)
chr7 (40-108)||(23355913-23355981)
chr7 (40-87)||(37829991-37830038)
chr7 (43-87)||(7879046-7879090)
[»] chr8 (6 HSPs)
chr8 (46-139)||(18069296-18069389)
chr8 (69-140)||(12020075-12020146)
chr8 (40-130)||(26055476-26055566)
chr8 (34-139)||(20472404-20472509)
chr8 (40-93)||(13380475-13380528)
chr8 (42-78)||(42810276-42810312)
[»] chr2 (3 HSPs)
chr2 (40-109)||(25726929-25726998)
chr2 (38-78)||(7648715-7648755)
chr2 (40-105)||(10156316-10156383)
[»] chr1 (2 HSPs)
chr1 (34-87)||(10280454-10280506)
chr1 (42-140)||(29561237-29561335)
[»] scaffold0071 (1 HSPs)
scaffold0071 (40-84)||(63447-63491)
[»] chr4 (1 HSPs)
chr4 (40-108)||(38752235-38752302)
[»] chr5 (2 HSPs)
chr5 (40-104)||(39735393-39735458)
chr5 (59-103)||(36364334-36364378)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 10427981 - 10428199
Alignment:
Q  5 ccaaacaaaacttaatatatagtttatactttttcttttgaatgacaaatgttcataattagttgttagattaacatttactcatttgtttgagtttgaa 104  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  10427981 ccaaacaaaacttaatatatactttatactttttctttggaatgacaaatgttcgtaattagttgttagattaacatttactcatttgtatgagtttgaa 10428080  T
Q  105 cccatggtcttcaactccttatccctaaactcaaactaactaagcaaccccaacccccatcttttgaaacaaaactacgtgtatactttatattattttt 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10428081 cccatggttttcaactccttatccctaaactcaaactaactaagctaccccaacccccatcttttgaaacaaaactacgagtatactttatattattttt 10428180  T
Q  205 acttttaaatgtatacttt 223  Q
    |||||||||||||||||||    
T  10428181 acttttaaatgtatacttt 10428199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 42529524 - 42529451
Alignment:
Q  67 ttgttagattaacatttactcatttgtttgagtttgaacccatggtcttcaactccttatccctaaactcaaac 140  Q
    |||||||||||| |||||||| || |||| ||||||||| ||||  || ||||||||||||||| | |||||||    
T  42529524 ttgttagattaatatttactctttcgtttaagtttgaactcatgacctccaactccttatcccttagctcaaac 42529451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 49972777 - 49972711
Alignment:
Q  40 ttttgaatgacaaatgttcataattagttgttagattaacatttactcatttgtttgagtttgaacc 106  Q
    |||||||||| |||||||  ||||||||||||| |||||  ||||||||||| |  |||||||||||    
T  49972777 ttttgaatgaaaaatgttagtaattagttgttatattaatctttactcatttatccgagtttgaacc 49972711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 35451129 - 35451190
Alignment:
Q  47 tgacaaatgttcataattagttgttagattaacatttactcatttgtttgagtttgaaccca 108  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  35451129 tgacaaatgttaataattagttgttagattaatatttactcattcgtttgagtttgaaccca 35451190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 23355981 - 23355913
Alignment:
Q  40 ttttgaatgacaaatgttcataattagttgttagattaacatttactcatttgtttgagtttgaaccca 108  Q
    ||||||| |||| |||||  || |||||| ||||||||| |||||||| ||||| ||||||||||||||    
T  23355981 ttttgaacgacatatgttagtatttagtttttagattaatatttactcctttgtctgagtttgaaccca 23355913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 37830038 - 37829991
Alignment:
Q  40 ttttgaatgacaaatgttcataattagttgttagattaacatttactc 87  Q
    ||||||||||||||||||  ||||||||||||||||||| || |||||    
T  37830038 ttttgaatgacaaatgttagtaattagttgttagattaatatctactc 37829991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 7879046 - 7879090
Alignment:
Q  43 tgaatgacaaatgttcataattagttgttagattaacatttactc 87  Q
    |||||||||||||||   |||||||||||||||||| ||||||||    
T  7879046 tgaatgacaaatgttagcaattagttgttagattaatatttactc 7879090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 18069389 - 18069296
Alignment:
Q  46 atgacaaatgttcataattagttgttagattaacatttactcatttgtttgagtttgaacccatggtcttcaactccttatccctaaactcaaa 139  Q
    ||||||||||||  |||||||||||| || ||| |||||||  |||||  ||||||||||| |||  |||||||||||||||||| ||||||||    
T  18069389 atgacaaatgttagtaattagttgttggaataatatttactactttgtccgagtttgaacctatgaccttcaactccttatcccttaactcaaa 18069296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 12020146 - 12020075
Alignment:
Q  69 gttagattaacatttactcatttgtttgagtttgaacccatggtcttcaactccttatccctaaactcaaac 140  Q
    |||||||||| |||||||||||  |||| ||||||||||| |  || ||||||||||||||| |||||||||    
T  12020146 gttagattaatatttactcattcatttgggtttgaacccaggacctccaactccttatcccttaactcaaac 12020075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 26055566 - 26055476
Alignment:
Q  40 ttttgaatgacaaatgttcataattagttgttagattaacatttactcatttgtttgagtttgaacccatggtcttcaactccttatccct 130  Q
    |||||||||  |||||||  ||||||||| ||||||||| |||||||| ||  ||  ||||||||||||||  || |||||||||||||||    
T  26055566 ttttgaatggtaaatgttagtaattagttattagattaatatttactctttcattcaagtttgaacccatgacctccaactccttatccct 26055476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 20472509 - 20472404
Alignment:
Q  34 tttttcttttgaatgacaaatgttcataattagttgttagattaacatttactcatttgtttgagtttgaacccatggtcttcaactccttatccctaaa 133  Q
    ||||| ||||||||   ||| |||| || |||||||||||||||| |||||||| |  || ||||||||||||||  |||| |||||| |||||||| |     
T  20472509 ttttttttttgaattgaaaacgttcttagttagttgttagattaatatttactcttccgtctgagtttgaacccagagtctccaactctttatcccttag 20472410  T
Q  134 ctcaaa 139  Q
    ||||||    
T  20472409 ctcaaa 20472404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 13380528 - 13380475
Alignment:
Q  40 ttttgaatgacaaatgttcataattagttgttagattaacatttactcatttgt 93  Q
    |||||||||||||||| |  || |||||||||||||||| |||||||| |||||    
T  13380528 ttttgaatgacaaatgctagtagttagttgttagattaatatttactcttttgt 13380475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 42810276 - 42810312
Alignment:
Q  42 ttgaatgacaaatgttcataattagttgttagattaa 78  Q
    |||||||||||||||| |||||||||| |||||||||    
T  42810276 ttgaatgacaaatgttaataattagttattagattaa 42810312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 25726929 - 25726998
Alignment:
Q  40 ttttgaatgacaaatgttcataattagttgttagattaacatttactcatttgtttgagtttgaacccat 109  Q
    |||| ||||| |||||||  || ||| |||||||||||| |||||||||||||||| |||||||| ||||    
T  25726929 tttttaatgaaaaatgttagtagttaattgttagattaatatttactcatttgttttagtttgaatccat 25726998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 7648715 - 7648755
Alignment:
Q  38 tcttttgaatgacaaatgttcataattagttgttagattaa 78  Q
    |||||| |||||||||| || ||||||||||||||||||||    
T  7648715 tcttttaaatgacaaatattaataattagttgttagattaa 7648755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 10156383 - 10156316
Alignment:
Q  40 ttttgaatgacaaatgttcataattagttgttagattaacattt--actcatttgtttgagtttgaac 105  Q
    |||| |||||||||| || ||| ||| |||||||||||| ||||  ||||||| ||||||||||||||    
T  10156383 ttttaaatgacaaatattaatagttaattgttagattaatatttttactcattcgtttgagtttgaac 10156316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 10280506 - 10280454
Alignment:
Q  34 tttttcttttgaatgacaaatgttcataattagttgttagattaacatttactc 87  Q
    |||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||    
T  10280506 tttttctttt-aatggcaaatgttcttaattagttgttagattaatatttactc 10280454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 29561335 - 29561237
Alignment:
Q  42 ttgaatgacaaatgttcataattagttgttagattaacatttactcatttgtttgagtttgaacccatggtcttcaactccttatccctaaactcaaac 140  Q
    ||||||||||||| ||  || ||| || ||||||||| |||||||||||||| || |||||||| ||   ||||||||| ||||   ||||||||||||    
T  29561335 ttgaatgacaaatattattagttaattattagattaatatttactcatttgtatgggtttgaactcaaaatcttcaacttcttaattctaaactcaaac 29561237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 63491 - 63447
Alignment:
Q  40 ttttgaatgacaaatgttcataattagttgttagattaacattta 84  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||    
T  63491 ttttgaatgacaaatgttattaattagttgttagattaatattta 63447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 38752302 - 38752235
Alignment:
Q  40 ttttgaatgacaaatgttcataattagttgttagattaacatttactcatttgtttgagtttgaaccca 108  Q
    ||||||||||||||| || | | |||||| ||||||||| ||||| |||||||| ||||||||||||||    
T  38752302 ttttgaatgacaaat-ttaacagttagttattagattaatatttattcatttgtctgagtttgaaccca 38752235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 39735393 - 39735458
Alignment:
Q  40 ttttgaatgacaaatgttcataattagtt-gttagattaacatttactcatttgtttgagtttgaa 104  Q
    ||||||||||||||||||  || |||||| |||| ||||| ||||||||||||||| | |||||||    
T  39735393 ttttgaatgacaaatgttagtagttagtttgttatattaatatttactcatttgttcgggtttgaa 39735458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 36364378 - 36364334
Alignment:
Q  59 ataattagttgttagattaacatttactcatttgtttgagtttga 103  Q
    |||||||||||||||||||| |||| ||||||||| || ||||||    
T  36364378 ataattagttgttagattaatatttcctcatttgtctgggtttga 36364334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University