View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3406_low_1 (Length: 506)
Name: NF3406_low_1
Description: NF3406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3406_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 19175275 - 19175542
Alignment:
| Q |
1 |
cacaacattgacaccgacacatgacataaataataatttattgtaattatatgtgttgttataggacactaaacaatctttcaatacgaagtgtctctac |
100 |
Q |
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| T |
19175275 |
cacaacattgacactgacacatgacacaaataataatttattgtaattatatgcgttgttgtaggacactaaacaatctttcaatacgaagtgtctctac |
19175374 |
T |
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| Q |
101 |
taaacacagatacaaaggacaaagtatattaattggtctaaaaaagcaataaaatattttgagaatataaacttttaaaccataaaattctttcaacact |
200 |
Q |
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| T |
19175375 |
tacatacacatacaaaggatatagtatattaattggtctaaaaaagcaataaaatattttgagaatataaactttttaaccataaaattctttcaacact |
19175474 |
T |
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| Q |
201 |
actgcatagagtttagagactggtctcatggtctccttatataaatcaaatcatagtttttaattgta |
268 |
Q |
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| T |
19175475 |
actccatagagtttagagactggtctcatggtctccttatacaaatcaaatcatagttcttaattgta |
19175542 |
T |
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Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 269 - 465
Target Start/End: Original strand, 19175579 - 19175775
Alignment:
| Q |
269 |
caaaggtcttgaattgacattacaagagcaattgtggccgcatcggtcacatttgcccacatcttactacaatataaagattcacaacatcttgaccnnn |
368 |
Q |
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| T |
19175579 |
caaaggtcttgaagtgacatcacaagagcaattctggccgcatcgatcacatttgcccacatcttactacaatataaagattcacaacgtcttgaccaaa |
19175678 |
T |
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| Q |
369 |
nnnnnnnnnnnnnnncgaagattcacaacgtaacaactttgcgtttgcaaccccaaaattcaaaaccataaattgcattcaaaatttgaaattgaag |
465 |
Q |
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| T |
19175679 |
aaaaataaaaataaataaagattcacaacgtaacaactttgctttcgcaaccccaaaattcaaaaccataaattgcattcaaaatttgaaattgaag |
19175775 |
T |
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