View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3406_low_2 (Length: 501)

Name: NF3406_low_2
Description: NF3406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3406_low_2
NF3406_low_2
[»] chr3 (5 HSPs)
chr3 (18-363)||(29554396-29554741)
chr3 (420-493)||(29554798-29554871)
chr3 (18-162)||(29539587-29539731)
chr3 (46-102)||(29554358-29554414)
chr3 (169-233)||(29556787-29556851)
[»] chr2 (1 HSPs)
chr2 (46-162)||(42194847-42194963)
[»] chr5 (4 HSPs)
chr5 (263-341)||(42779948-42780026)
chr5 (46-171)||(42780152-42780282)
chr5 (426-493)||(42779797-42779863)
chr5 (291-334)||(27313979-27314022)
[»] chr8 (1 HSPs)
chr8 (177-212)||(44374663-44374699)


Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 29554396 - 29554741
Alignment:
Q  18 ggatctgccactgaatgcgccatgtgcgatgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtgcaatcaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29554396 ggatctgccactgaatgcgccatgtgcgatgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtgcaatcaac 29554495  T
Q  118 agcgtcagtgacgcactataaacacatgtcttctgctcaaaggcctgtcagatgttagtttagagtctattatgttttatttatattcttttatatcttt 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29554496 agcgtcagtgacgcactataaacaaatgtcttctgctcaaaggcctgtcagatgttagtttagagtctattatgttttatttatattcttttatatcttt 29554595  T
Q  218 tcgtaatgctaaactatatgaaactctaattgtcgtctttgttttttgttttgttattgtctcagaaacctagattgttaacatggtatcaaaagctttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  29554596 tcgtaatgctaaactatatgaaactctaattgtcgtctttgttttttgttttgttattgtctctgaaacctagattgttaacatggtatcaaaagctttg 29554695  T
Q  318 ttcgatccaccttgaactacggtttcacttccattattgagttcct 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29554696 ttcgatccaccttgaactacggtttcacttccattattgagttcct 29554741  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 420 - 493
Target Start/End: Original strand, 29554798 - 29554871
Alignment:
Q  420 ttctgttgaagaaaatttaatctgttgcttttgttcagttagcaatatgtggtctattcttttgaatctgtgct 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29554798 ttctgttgaagaaaatttaatctgttgcttttgttcagttagcaatatgtggtctattcttttgaatttgtgct 29554871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 29539587 - 29539731
Alignment:
Q  18 ggatctgccactgaatgcgccatgtgcgatgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtgcaatcaac 117  Q
    |||||||||||||  ||||||||||||  |||||||||||||| | |||| || ||||||||| ||||||||| ||| | ||||| | ||||||||||||    
T  29539587 ggatctgccactgcttgcgccatgtgcagtgagtggtcttgtgggcaatgtacctatgcaaacatcggatctgccacagcatgcgcggtgtgcaatcaac 29539686  T
Q  118 agcgtcagtgacgcactataaacacatgtcttctgctcaaaggcc 162  Q
    ||||||| |||| ||||| ||||||||| ||||| ||||||||||    
T  29539687 agcgtcaatgacccactagaaacacatgccttctactcaaaggcc 29539731  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 29554358 - 29554414
Alignment:
Q  46 atgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcg 102  Q
    ||||||||| |||||||  ||| || ||||||||||||||||||| |||||||||||    
T  29554358 atgagtggtattgtgagcgatgtacctatgcaaacgtcggatctgccactgaatgcg 29554414  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 29556787 - 29556851
Alignment:
Q  169 atgttagtttagagtctattatgttttatttatattcttttatatcttttcgtaatgctaaacta 233  Q
    ||||| ||||||| || || | |||||||||||||||||||||| | ||| |||||| |||||||    
T  29556787 atgtttgtttagaatccataaggttttatttatattcttttatacccttttgtaatgttaaacta 29556851  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 42194847 - 42194963
Alignment:
Q  46 atgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtgcaatcaacagcgtcagtgacgcactataaacacatg 145  Q
    ||||||||||||||||| |||| || |||||||| || ||||||| ||| | ||||| ||||||||||||| |||| || |||| |||||||||||||||    
T  42194847 atgagtggtcttgtgagcaatgtacctatgcaaatgttggatctgccaccgcatgcgcgatgtgcaatcaagagcggcaatgacccactataaacacatg 42194946  T
Q  146 tcttctgctcaaaggcc 162  Q
    |||||||||||||||||    
T  42194947 tcttctgctcaaaggcc 42194963  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 42780026 - 42779948
Alignment:
Q  263 ttgttttgttattgtctcagaaacctagattgttaacatggtatcaaaagctttcttcgatccaccttgaactacggtt 341  Q
    |||||||||||||||||  |||||||||| | ||||| ||||||||| |||||| || |||||| ||| ||||||||||    
T  42780026 ttgttttgttattgtctttgaaacctagactattaacgtggtatcaagagctttgtttgatccatcttaaactacggtt 42779948  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 42780282 - 42780152
Alignment:
Q  46 atgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatg-----cgtgatgtgcaatcaacagcgtcagtgacgcactataaac 140  Q
    ||||||||||||||||| |||| || ||||||||||||||||||| ||||| |||      ||| |||| ||||||||| |||| |||| ||||| |||     
T  42780282 atgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtgttgtgtaatcaacagtgtcaatgacccactacaaaa 42780183  T
Q  141 acatgtcttctgctcaaaggcctgtcagatg 171  Q
    | ||||||| || |||||||| ||| |||||    
T  42780182 aaatgtcttttgttcaaaggcttgttagatg 42780152  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 493
Target Start/End: Complemental strand, 42779863 - 42779797
Alignment:
Q  426 tgaagaaaatttaatctgttgcttttgttcagttagcaatatgtggtctattcttttgaatctgtgct 493  Q
    ||||||||||| ||| |||||||||| ||  | |||||||||||||||||||||||||||| ||||||    
T  42779863 tgaagaaaattgaatttgttgctttttttt-gctagcaatatgtggtctattcttttgaatttgtgct 42779797  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 27313979 - 27314022
Alignment:
Q  291 attgttaacatggtatcaaaagctttcttcgatccaccttgaac 334  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||    
T  27313979 attgttaacatggtatcaagagctttgttcgatcctccttgaac 27314022  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 44374663 - 44374699
Alignment:
Q  177 ttagagtctattatgttttatt-tatattcttttata 212  Q
    |||||||||||||||||||||| ||||||||||||||    
T  44374663 ttagagtctattatgttttattatatattcttttata 44374699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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