View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3406_low_3 (Length: 403)
Name: NF3406_low_3
Description: NF3406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3406_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 169 - 396
Target Start/End: Complemental strand, 7365020 - 7364793
Alignment:
| Q |
169 |
acatgcaccatggagtttgtagagaatcccaagcaccaacttcagcaaaatttgcacctgaattataaattccatcagcatcatcaacaatcattggaaa |
268 |
Q |
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| T |
7365020 |
acatgcaccatggagtttgtagagaatcccaagcaccaacttcagcaaaatttgcacctgaattataaattccatcagcatcatcaacaatcattggaaa |
7364921 |
T |
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| Q |
269 |
atccattgaaattgcagcatctaaagacatagcagcttctgtccaaattgaatcatcatcaattactggcatggtttcataattcactgttccaaaaaat |
368 |
Q |
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| T |
7364920 |
atccattgaaattgcagcatctaaagacatagcagcttctgtccaaattgaatcatcatcaattactggcatggtttcataattcactgttccaaaaaat |
7364821 |
T |
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| Q |
369 |
gaatcactactaatctccataccctttg |
396 |
Q |
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| T |
7364820 |
gaatcactactaatctccataccctttg |
7364793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 7365193 - 7365145
Alignment:
| Q |
18 |
atactatgtgtatattatagtatagtatacatgtacctaatgcaagacc |
66 |
Q |
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| T |
7365193 |
atactatgtgtatattatagtatagtatacatgtacctaatgcaagacc |
7365145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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