View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3408_high_1 (Length: 515)
Name: NF3408_high_1
Description: NF3408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3408_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 9 - 507
Target Start/End: Complemental strand, 15909091 - 15908603
Alignment:
| Q |
9 |
agcacagacactgaactagacattgacacttcgacaattgaatgtagcaacatatgtcgatgtcatgtcagtctcaaacaccagacacgacttcaatcag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15909091 |
agcacagacactgaactagacattgacacttcgacaattgaatgtagcaacatatgtcgatgtcatgtcagtctcaaacaccagacacgacttcaatcag |
15908992 |
T |
|
| Q |
109 |
attgaagtgtaggagatcataagactttaaattttagaccaagtaaatgtaatgtatcagacattattagatttgttagttagttagttaaatcagttaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15908991 |
attgaagtgtaggagatcataagactttaaattttagacctagtaaatgtaatgtaacagacattattagatttgttagttagttagttaaatcagttaa |
15908892 |
T |
|
| Q |
209 |
caaacagtttacaattgttattaagttagtcagacaaagcacccacaaagacatgaatatcagacacgatact--tattgatatgtcggcaccggtaata |
306 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15908891 |
gaaacagtttacaattgttattaagttagtcattcaaagc-----------catgaatatcagacacgatactcatattgatatgtcggcaccggtaata |
15908803 |
T |
|
| Q |
307 |
atttgagaaaaataaaagaatggaatataagtacatatgttggtgtccgacaccaatacgtgtcagtcactatatacgtcttccatctgaagtgtcagtg |
406 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15908802 |
atttgagaaaa-taaaaggatggaatataagtacatatgttggtgtccgacaccaatacgtgtcagtcactatatacgtcttccatctgaagtgtcagtg |
15908704 |
T |
|
| Q |
407 |
ctacataacacaattgtaaattgtttataactgattttagagactaacaagtctaataggaaacaacaattgcaaaaataaatcccctttctgtttgtgc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15908703 |
ctacataacacaattgtaaattgtttataactgattttagagactaacaagtctaataggaaacaacaattgcaaaaataaatcccctttctgtttgtgc |
15908604 |
T |
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