View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3408_low_2 (Length: 437)

Name: NF3408_low_2
Description: NF3408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3408_low_2
NF3408_low_2
[»] chr7 (2 HSPs)
chr7 (11-200)||(3626795-3626984)
chr7 (132-199)||(24857329-24857396)
[»] chr2 (4 HSPs)
chr2 (11-199)||(21466414-21466602)
chr2 (11-199)||(33224131-33224319)
chr2 (11-89)||(26648148-26648226)
chr2 (153-200)||(8078495-8078542)
[»] chr6 (4 HSPs)
chr6 (11-202)||(8370986-8371177)
chr6 (11-197)||(513860-514046)
chr6 (11-200)||(34845192-34845381)
chr6 (11-199)||(15137045-15137235)
[»] chr5 (1 HSPs)
chr5 (11-191)||(39174982-39175162)
[»] chr4 (4 HSPs)
chr4 (11-170)||(34132057-34132216)
chr4 (11-172)||(53911844-53912005)
chr4 (11-198)||(29582394-29582585)
chr4 (90-179)||(21181493-21181582)
[»] chr3 (5 HSPs)
chr3 (277-423)||(35204659-35204805)
chr3 (11-86)||(35204418-35204493)
chr3 (90-207)||(35204474-35204581)
chr3 (147-199)||(17711928-17711980)
chr3 (147-199)||(19013185-19013237)
[»] chr8 (1 HSPs)
chr8 (164-199)||(28524402-28524437)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 3626795 - 3626984
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3626795 catagggtgagagaaacttgggttattggtgcaaaatgtttggctcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 3626894  T
Q  111 acactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcctctcacttatatgtggcaccgccactgc 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  3626895 gcactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcccctcacttatatgtggcaccaccactgc 3626984  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 24857329 - 24857396
Alignment:
Q  132 catgtgcaaattttaaaagctcaggggatgcaagtgcatcctctcacttatatgtggcaccgccactg 199  Q
    |||||||||||||| |||   |||||||||||  ||||||| ||||||| |||||||| |||||||||    
T  24857329 catgtgcaaattttgaaaatccaggggatgcatctgcatcccctcacttgtatgtggctccgccactg 24857396  T

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Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 21466602 - 21466414
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21466602 catagggtgagagaaacttgggttattggtgcaaaatgtttggctcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 21466503  T
Q  111 acactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcctctcacttatatgtggcaccgccactg 199  Q
     ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21466502 gcactaataaaacactgcaatcatgtgcaaattttaaaagatcaggggatgcaagtgcatcccctcacttatatgtggcaccgccactg 21466414  T

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Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 33224319 - 33224131
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 110  Q
    ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33224319 catagggtgagagaaacttggattattggtgcaatatgtttggctcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 33224220  T
Q  111 acactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcctctcacttatatgtggcaccgccactg 199  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  33224219 acactaataaaacagtgcaatcatgtggaaattttaaaagtccaggggatgcaagtgcatcccctcacttatatgtggcaccaccactg 33224131  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 26648148 - 26648226
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatcc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26648148 catagggtgagagaaacttgggttattggtgcaaaatgtttggctcaattgcaatgttaaaatatgaggaggttcatcc 26648226  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 8078495 - 8078542
Alignment:
Q  153 caggggatgcaagtgcatcctctcacttatatgtggcaccgccactgc 200  Q
    |||||||||||  ||||||| ||||||| |||||||||||||||||||    
T  8078495 caggggatgcatctgcatcccctcacttgtatgtggcaccgccactgc 8078542  T

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Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 8370986 - 8371177
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 110  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  8370986 cataggctgagagaaacttgggttattggtgcaaaatgtttggctcaattgcaatgttaagatatgaggaggttcattcttaaaatatcaggaggttcaa 8371085  T
Q  111 acactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcctctcacttatatgtggcaccgccactgctt 202  Q
     ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  8371086 gcactaataaaacagtacaatcatgtgcaaattttaaaagctcaggagatgcaagtgcatcccctcacttatatgtggcaccgccactgctt 8371177  T

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Target: chr6; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 513860 - 514046
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  513860 catagggtgagagaaacttggattattggtgcaaaatgtttggctcaattgcaatgttaaaatatgaggagattcatccttaaaatatcaggaggttcaa 513959  T
Q  111 acactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcctctcacttatatgtggcaccgccac 197  Q
     |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||    
T  513960 gcactaataaaacagtgcaatcatgtgcaaattttaaaagcccaagggatgcaagtgcatcccctcacttatatgtggcaccgccac 514046  T

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Target: chr6; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 34845192 - 34845381
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  34845192 catagggtgagagaaacttgggttattggtgtaaaatgtttggctcaattgcaatgttaaaatatgaggagattcttccttaaaatatcaggaggttcaa 34845291  T
Q  111 acactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcctctcacttatatgtggcaccgccactgc 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  34845292 gcactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggaaatgcaagtgcatcccctcacttatatgtggcaccgccactgc 34845381  T

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Target: chr6; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 15137235 - 15137045
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15137235 catagggtgagagaaacttgggttattggtgcaaaatgtttggctcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 15137136  T
Q  111 acactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaa--gtgcatcctctcacttatatgtggcaccgccactg 199  Q
     ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||  |||||||| ||||||||||||||||||||||||||    
T  15137135 gcactaataaaacagtacaatcatgtgcaaattttaaaagcccagaggatgcaagtgtgcatcccctcacttatatgtggcaccgccactg 15137045  T

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Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 39175162 - 39174982
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39175162 catagggtgagagaaacttgggttattggtgcaaaatgtttggctcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggtttaa 39175063  T
Q  111 acactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcctctcacttatatgtggcac 191  Q
     |||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||||||||    
T  39175062 gcactaataaaacagtgcaatcatgtgcaaattttaaaagtccagggaatgcaagtgcatcccctcacttatatgtggcac 39174982  T

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Target: chr4 (Bit Score: 148; Significance: 6e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 34132216 - 34132057
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34132216 catagggtgagagaaacttgggttattggtgcaaaatgtttggctcaattgcaatgttaaaatatgagaaggttcatccttaaaatatcaggaggttcaa 34132117  T
Q  111 acactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcat 170  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34132116 gcactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcat 34132057  T

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Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 53912005 - 53911844
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggttcaa 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  53912005 catagggtgagagaaacttggattattggtgcaaaatgtttggctcaattgcaatgttaaaatatgaggaggttcatccttaaaatatcaggaggtttaa 53911906  T
Q  111 acactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcc 172  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53911905 gcactaataaaacagtgcaatcatgtgcaaattttaaaagcccaggggatgcaagtgcatcc 53911844  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 29582394 - 29582585
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatg--aggaggttcatccttaaaatatcaggaggttc 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||   |||||||| ||||||||||||||| ||| |||    
T  29582394 catagggtgagggaaacttgggttattggtgcaaaatgtttggctcaagtgcaatgttaaaatatatcaggaggttgatccttaaaatatcatgagattc 29582493  T
Q  109 aaacactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgc--atcctctcacttatatgtggcaccgccact 198  Q
    ||  | |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||  || |||||| ||||| ||||| ||||||||    
T  29582494 aagtagtaataaaacagtgcaatcatgtgcaaattttaaaagcttaggagatgcaactgcatattctctcatttatacgtggctccgccact 29582585  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 21181493 - 21181582
Alignment:
Q  90 ttaaaatatcaggaggttcaaacactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcctctcact 179  Q
    |||||||||||| ||||||||  |  |  |||||||||| |||||||||||| ||||||||  |||||||||||  ||||||| ||||||    
T  21181493 ttaaaatatcagtaggttcaagtagcatgaaaacagtgccatcatgtgcaaaatttaaaagtccaggggatgcagctgcatcccctcact 21181582  T

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Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 277 - 423
Target Start/End: Original strand, 35204659 - 35204805
Alignment:
Q  277 cggattgcaaggttgggtagtatattactctttctcgtatctagttaaatttacgggtaatatccgaacccataaaaggtggttttaccccacccattac 376  Q
    |||||||| ||||||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35204659 cggattgcgaggttgggtagtatattactcttactcgtatccattaaaatttacgggtaatatccgaacccataaaagatggttttaccccacccattac 35204758  T
Q  377 gggtatccatcgaatctcgggccaattgccatcccaattcacacact 423  Q
    || ||||||||||||||||||||||||||||||||||||||||||||    
T  35204759 ggatatccatcgaatctcgggccaattgccatcccaattcacacact 35204805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 35204418 - 35204493
Alignment:
Q  11 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35204418 catagggtgagagaaacttgggttattggtgcaaaatgtttgggtcaattgcaatgttaaaatatgaggaggttca 35204493  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 35204474 - 35204581
Alignment:
Q  90 ttaaaatatcaggaggttcaaacactaataaaacagtgcaatcatgtgcaaattttaaaagctcaggggatgcaagtgcatcctctcacttatatgtggc 189  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||           |  ||||||| ||||||||||||||||    
T  35204474 ttaaaatatgaggaggttcaagcactaataaaacagtgcaatcatgtgcaaattttaaaagc----------aacttgcatcccctcacttatatgtggc 35204563  T
Q  190 accgccactgcttagatc 207  Q
    ||||||||||||||||||    
T  35204564 accgccactgcttagatc 35204581  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 17711980 - 17711928
Alignment:
Q  147 aaagctcaggggatgcaagtgcatcctctcacttatatgtggcaccgccactg 199  Q
    |||| |||||||||||||||||||||||||| |  || ||||| |||||||||    
T  17711980 aaaggtcaggggatgcaagtgcatcctctcaatggtacgtggctccgccactg 17711928  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 19013237 - 19013185
Alignment:
Q  147 aaagctcaggggatgcaagtgcatcctctcacttatatgtggcaccgccactg 199  Q
    |||| |||||||||||||||||||||||||| |  || ||||| |||||||||    
T  19013237 aaaggtcaggggatgcaagtgcatcctctcaatggtacgtggctccgccactg 19013185  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 28524402 - 28524437
Alignment:
Q  164 agtgcatcctctcacttatatgtggcaccgccactg 199  Q
    ||||||||| ||||||||||||||||||||||||||    
T  28524402 agtgcatcccctcacttatatgtggcaccgccactg 28524437  T

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