View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3408_low_3 (Length: 348)

Name: NF3408_low_3
Description: NF3408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3408_low_3
NF3408_low_3
[»] chr5 (1 HSPs)
chr5 (1-332)||(3004239-3004588)
[»] chr4 (1 HSPs)
chr4 (1-332)||(54654286-54654643)
[»] chr6 (2 HSPs)
chr6 (44-171)||(6666936-6667074)
chr6 (123-196)||(6781261-6781336)
[»] chr7 (4 HSPs)
chr7 (262-309)||(24761536-24761583)
chr7 (262-309)||(24761167-24761214)
chr7 (196-235)||(24761210-24761249)
chr7 (196-235)||(24761579-24761618)
[»] chr3 (5 HSPs)
chr3 (262-309)||(52128971-52129018)
chr3 (262-309)||(52128602-52128649)
chr3 (196-235)||(52128645-52128684)
chr3 (196-235)||(52129014-52129053)
chr3 (53-93)||(49879762-49879802)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 3004588 - 3004239
Alignment:
Q  1 taaacagatcaagataattgaaaacacaacataaattttcagcaaggtggaatactaacctgaacagattgctttttcagacttctaatatgtgtagtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3004588 taaacagatcaagataattgaaaacacaacataaattttcagtaaggtggaatactaacctgaacagattgctttttcagacttctaatatgtttagtta 3004489  T
Q  101 tttgataacaattcaatcaagg-aacatcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatatc-- 195  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||      
T  3004488 tttgataacaattcaatcaaggaaacatcatcatttacttgatcagcatctgtcccgtcctggttgaattcaatcccatcttgtttgtgctctatatcac 3004389  T
Q  196 -------------accactaaacacaaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaatcaaaatgggattggaaacaaaca 282  Q
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004388 cactaaacacttgaccactaaacacaaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaatcaaaatgggattggaaacaaaca 3004289  T
Q  283 taattagcaaataaactacactgatttaaaaattaccagaagtagcaaat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004288 taattagcaaataaactacactgatttaaaaattaccagaagtagcaaat 3004239  T

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Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 54654643 - 54654286
Alignment:
Q  1 taaacagatcaagataattgaaaacacaacataaattttcagcaaggtggaatactaacctgaacagattgctttttcagacttctaatatgtgtagtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  54654643 taaacagatcaagataattgaaaacacaacataaattttcaggaaggaggaatactaacctgaacagattgctttttcagacttctaatatgttcagtta 54654544  T
Q  101 tttgat--------aacaattcaatcaaggaa-catcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctc 189  Q
    ||| ||        |||||||||||||||||| ||||||||||  ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||    
T  54654543 tttaatcatgtgtgaacaattcaatcaaggaaacatcatcattgtcttgatcagcatctgtcccctcctggttgaattcaatcccatcttgtttgtgctc 54654444  T
Q  190 tatatcaccactaaacac---------------aaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaatcaaaatgggattgga 274  Q
    ||||||||||||||||||               |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  54654443 tatatcaccactaaacacttgaccactaaacacaaagaacgccaactgaaaaacacaaatgcagtcaccgcgacacatacttaatcaaaatgggatttga 54654344  T
Q  275 aacaaacataattagcaaataaactacactgatttaaaaattaccagaagtagcaaat 332  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54654343 aacaaatataattagcaaataaactacactgatttaaaaattaccagaagtagcaaat 54654286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 6667074 - 6666936
Alignment:
Q  44 aaggtggaatactaacctgaacagattgctttttcagacttctaatatgtgtagttatttgat--------aacaattcaatcaagg-aacatcatcatt 134  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||||||   ||||||||||        ||||  |||||||||| ||||||||||||    
T  6667074 aaggtggtgtactaacctgaacagattgctttttcagacttgtaatatgttcggttatttgatcatgtgtgaacatatcaatcaaggaaacatcatcatt 6666975  T
Q  135 tacttgatcggcatctgt--cctcctggttgaattcaat 171  Q
     |||||||||||||||||  |||||||||||||| ||||    
T  6666974 aacttgatcggcatctgtcccctcctggttgaatccaat 6666936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 6781261 - 6781336
Alignment:
Q  123 aacatcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatatca 196  Q
    |||| |||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||    
T  6781261 aacagcatcatttacttgatcagcatctgtcccctcctggttgaattcaattccatcttgtttgtgctcgatatca 6781336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 24761583 - 24761536
Alignment:
Q  262 aaatgggattggaaacaaacataattagcaaataaactacactgattt 309  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24761583 aaatgggattggaaacaaacataattagcaaataaactatactgattt 24761536  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 24761214 - 24761167
Alignment:
Q  262 aaatgggattggaaacaaacataattagcaaataaactacactgattt 309  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  24761214 aaatgggatcggaaacaaacataattagcaaataaactatactgattt 24761167  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 24761249 - 24761210
Alignment:
Q  196 accactaaacacaaagaacgccaactgaaaaacacaaatg 235  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  24761249 accactaaacacaaagaacaccaactgagaaacacaaatg 24761210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 24761618 - 24761579
Alignment:
Q  196 accactaaacacaaagaacgccaactgaaaaacacaaatg 235  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  24761618 accactaaacacaaagaacaccaactgagaaacacaaatg 24761579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 52129018 - 52128971
Alignment:
Q  262 aaatgggattggaaacaaacataattagcaaataaactacactgattt 309  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52129018 aaatgggattggaaacaaacataattagcaaataaactatactgattt 52128971  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 52128649 - 52128602
Alignment:
Q  262 aaatgggattggaaacaaacataattagcaaataaactacactgattt 309  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  52128649 aaatgggatcggaaacaaacataattagcaaataaactatactgattt 52128602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 52128684 - 52128645
Alignment:
Q  196 accactaaacacaaagaacgccaactgaaaaacacaaatg 235  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  52128684 accactaaacacaaagaacaccaactgagaaacacaaatg 52128645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 52129053 - 52129014
Alignment:
Q  196 accactaaacacaaagaacgccaactgaaaaacacaaatg 235  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  52129053 accactaaacacaaagaacaccaactgagaaacacaaatg 52129014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 49879802 - 49879762
Alignment:
Q  53 tactaacctgaacagattgctttttcagacttctaatatgt 93  Q
    |||||||||||||||||| |||| ||||||| |||||||||    
T  49879802 tactaacctgaacagattcctttctcagactactaatatgt 49879762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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