View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3408_low_5 (Length: 261)
Name: NF3408_low_5
Description: NF3408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3408_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 3074043 - 3073793
Alignment:
| Q |
11 |
cagagacgcgatcatgctattaataagggcgatgatgaaaaatagaaacatagttgtcctgtttgcaacaaagttttttcatccattaaggctttctgcg |
110 |
Q |
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| T |
3074043 |
cagagacgcgatcatgctattaataagggcgatgatgaaaaatagaaacatagttgtcctgtttgcaacaaagttttttcatccattaaggctttctgcg |
3073944 |
T |
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| Q |
111 |
gacatatgatattacaccatgaaaagggttccaagagtattcaatctccaaccacattcgtggaacaatttaaatttcaagttggtattgcacacccagc |
210 |
Q |
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| T |
3073943 |
aacatatgatattgcaccatgaaaagggttccaagagtattcaatctccaaccacattcgtggaacaatttaaatttcaagttggtattgcacacccagc |
3073844 |
T |
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| Q |
211 |
aattgacttaaccattattcgccaccaaagtcccataaaaccaatcaacgt |
261 |
Q |
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| T |
3073843 |
aattgacttaaccattattcgccaccaaagtcccataaaaccaatcaacgt |
3073793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 27732378 - 27732167
Alignment:
| Q |
40 |
cgatgatgaaaaatagaaacatagttgtcctgtttgcaacaaagttttttcatccattaaggctttctgcggacatatgatattacaccatgaaaagggt |
139 |
Q |
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| T |
27732378 |
cgatgatgagaaacagaaacataggtgtcctgtttgcaacaaggttttttcatccaacaaggctttttgcggacatatgatattgcaccatgaaaagggt |
27732279 |
T |
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| Q |
140 |
tccaagagtattcaatctccaaccacattcgtggaacaatttaaatttcaagttggtattgcacacccagcaattgacttaacc-attattcgccaccaa |
238 |
Q |
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| T |
27732278 |
tccaagagtattcattcaccaaccacattcttggaacaatttcaatttcaagttggtattgcaccaccagctattgacttaaccaagtattcgccaccaa |
27732179 |
T |
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| Q |
239 |
agtcccataaaa |
250 |
Q |
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| T |
27732178 |
agtcccataaaa |
27732167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 21155829 - 21155606
Alignment:
| Q |
41 |
gatgatgaaaaatagaaacatagttgtcctgtttgcaacaaagttttttcatccattaaggctttctgcggacatatgatattacaccatgaaaagggtt |
140 |
Q |
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| T |
21155829 |
gatgatgagaaacagaaatatagttgtcctgtttgcaacaaggttttttcatccactaaggctttctatagacatatgatattgcactctgaaaagggtt |
21155730 |
T |
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| Q |
141 |
ccaagagtattcaatctccaaccacattcgtggaacaatttaaatttcaagttggtattgcacacccagcaattgacttaacc-attattcgcc---acc |
236 |
Q |
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| T |
21155729 |
cgaagagtattcaattgccaaccacatccttcgaacaatttcaatttcaagttagtattgcaccaccagcgattgacttaaccaagtattcgccgctgcc |
21155630 |
T |
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| Q |
237 |
aaagtcccataaaaccaatcaacg |
260 |
Q |
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| T |
21155629 |
aaagtcccataaaaccaataaacg |
21155606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 21073751 - 21073805
Alignment:
| Q |
41 |
gatgatgaaaaatagaaacatagttgtcctgtttgcaacaaagttttttcatcca |
95 |
Q |
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| T |
21073751 |
gatgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatcca |
21073805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 21249296 - 21249459
Alignment:
| Q |
41 |
gatgatgaaaaatagaaacatagttgtcctgtttgcaacaaagttttttcatccattaaggctttctgcggacatatgatattacaccatgaaaagggtt |
140 |
Q |
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| T |
21249296 |
gatgatcagaaacagaaacatggttgtcttgtttgcaacaaggttttttcatccaataaggctttatgcggacatatgatattgcaccgtgataagggtc |
21249395 |
T |
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| Q |
141 |
ccaagagtattcaatctccaaccacattcgtggaacaattt-aaatttcaagttggtattgcac |
203 |
Q |
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| T |
21249396 |
ccaagagtactcaatctccaaccacatcctttgaaaaatttcaaatttcaagttggtattgcac |
21249459 |
T |
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