View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3408_low_8 (Length: 235)
Name: NF3408_low_8
Description: NF3408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3408_low_8 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 3073446 - 3073662
Alignment:
| Q |
19 |
aatcaactcattgattcaattgagcacaataatagatcttcaattgcaaatagaaaactacaaaacttccaattatcattgcacgaccttgttgtttttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3073446 |
aatcaactcattgattcaattgagcacaataatagatcttcaattgcaaatagaaaactacaaaacttccaattatcattgcacgaccttgttgtctttt |
3073545 |
T |
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| Q |
119 |
accttgaatctaaacaacaaacactttttacaactattattgttattaatattcaccttggtcgccgatgtttcatcaatgtcactaacttgtttctcga |
218 |
Q |
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| T |
3073546 |
accttgaatctaaacaaaaaacaatttttacaactattattgttattaatattcaccttggtcgccgatgtttcatcaatgtcactaacttgtttctcga |
3073645 |
T |
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| Q |
219 |
tcttgtcattatccaca |
235 |
Q |
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||||||||||||||||| |
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| T |
3073646 |
tcttgtcattatccaca |
3073662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 235
Target Start/End: Original strand, 21155330 - 21155473
Alignment:
| Q |
95 |
cattgcacgaccttgttgttttttaccttgaatctaaacaacaaacactttttacaactattattgttattaa---tattcaccttggtcgccgatgttt |
191 |
Q |
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| T |
21155330 |
cattgcacgaccttgttgtctttaaccttgaatctcaacaacaaactctttttacggttattatcattattatccttcttcaccttagtagccggtgttt |
21155429 |
T |
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| Q |
192 |
catcaatgtcactaacttgtttctcgatcttgtcattatccaca |
235 |
Q |
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| T |
21155430 |
catcgatgtcactaacttgtttctcgatcttgtcattatccaca |
21155473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 21154905 - 21154961
Alignment:
| Q |
41 |
agcacaataatagatcttcaattgcaaatagaaaactacaaaacttccaattatcat |
97 |
Q |
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| T |
21154905 |
agcacaataatagatcttcaatcgtaaatagaaaactacaaaacttccaattatcat |
21154961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 27731434 - 27731501
Alignment:
| Q |
30 |
tgattcaattgagcacaataatagatcttcaattgcaaatagaaaactacaaaacttccaattatcat |
97 |
Q |
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| T |
27731434 |
tgattcaattgagcacaatattagatcttgaattgtaaatagaaaactacaaaacttccaattatcat |
27731501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 27738443 - 27738521
Alignment:
| Q |
19 |
aatcaactcattgattcaattgagcacaataatagatcttcaattgcaaatagaaaactacaaaacttccaattatcat |
97 |
Q |
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| T |
27738443 |
aatcacctcactaattcaattgagcacaataatagatctttaattgtaaatagaaaactacaaaactttcgattatcat |
27738521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 21250098 - 21250032
Alignment:
| Q |
30 |
tgattcaattgagcacaataatagatcttcaattgcaaatagaaaactacaaaacttccaattatca |
96 |
Q |
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| T |
21250098 |
tgattcaattgtgcacaataatagatcttcaattgtaaatagaaaactataaaacttccaattatca |
21250032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 21249566 - 21249501
Alignment:
| Q |
170 |
ttcaccttggtcgccgatgtttcatcaatgtcactaacttgtttctcgatcttgtcattatccaca |
235 |
Q |
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| T |
21249566 |
ttcaccttggttgccaatgttacattaatgtcaccaacttgtttctcgatcttttcattatccaca |
21249501 |
T |
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