View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3409_high_2 (Length: 397)
Name: NF3409_high_2
Description: NF3409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3409_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 17066030 - 17066228
Alignment:
| Q |
1 |
attctctcttttgtacttgtattgttaacatgatatctcgagcttgtttcgatccgtcttaaaggagataactgt-gagtgatctcacacgcatcggcct |
99 |
Q |
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| T |
17066030 |
attctctcttttgtacttgtattgtcaacatgatatctcgagcttgtttcgatccgt-ttaaaggagataactgtcgagtgatctcacacacatcggcct |
17066128 |
T |
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| Q |
100 |
ctcaagcattttctcaacactctagttttgaatctagtcttggtgtttggttttgatgcatgaatacctagattctgttatggtgacttctattcccacc |
199 |
Q |
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| T |
17066129 |
ctcaagcattttctcaacactctagttttgaatctagtcttggtgtttggttttgatgcatgaatacctagattatgttatggtgacttctattcccacc |
17066228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 226 - 390
Target Start/End: Original strand, 17066227 - 17066391
Alignment:
| Q |
226 |
ccgacacttgttccggtggtgactgttcctacatatggatcatattagaggtgaattttcttcccaccaacgatgatcagtcctgacttctaatcccaca |
325 |
Q |
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| T |
17066227 |
ccgacacttgttccggtggtgactcttcccacatatggatcatattagaggtgaattttcttcccaccaacgatgatcagtcctgacttctaatcccaca |
17066326 |
T |
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| Q |
326 |
aacacttattccggttgtgacacttcccacatatggatcgtattagaggtgaattttcttctcac |
390 |
Q |
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| T |
17066327 |
aacacttattccggttgtgacacttcccacatatggatcgtattagaggtgaattttcttctcac |
17066391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 17066287 - 17066387
Alignment:
| Q |
192 |
ttcccaccaacgatgatcagtcctgacttctaatcc----gacacttgttccggtggtgactgttcctacatatggatcatattagaggtgaattttctt |
287 |
Q |
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| T |
17066287 |
ttcccaccaacgatgatcagtcctgacttctaatcccacaaacacttattccggttgtgacacttcccacatatggatcgtattagaggtgaattttctt |
17066386 |
T |
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| Q |
288 |
c |
288 |
Q |
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| T |
17066387 |
c |
17066387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 17066212 - 17066289
Alignment:
| Q |
309 |
tgacttctaatcccacaaacacttattccggttgtgacacttcccacatatggatcgtattagaggtgaattttcttc |
386 |
Q |
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| T |
17066212 |
tgacttctattcccaccgacacttgttccggtggtgactcttcccacatatggatcatattagaggtgaattttcttc |
17066289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 17066433 - 17066473
Alignment:
| Q |
264 |
atcatattagaggtgaattttcttcccaccaacgatgatca |
304 |
Q |
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| T |
17066433 |
atcatattagtggtgacttttcttcccaccgacgatgatca |
17066473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24131919 - 24131973
Alignment:
| Q |
1 |
attctctcttttgtacttgtattgttaacatgatatctcgagcttgtttcgatcc |
55 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |
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| T |
24131919 |
attctctcttttgtacttgtattgttaacatggtatcaagagcttgttttgatcc |
24131973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 22822731 - 22822784
Alignment:
| Q |
251 |
ttcctacatatggatcatattagaggtgaattttcttcccaccaacgatgatca |
304 |
Q |
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|||| ||| |||||||||||||| ||||||||||||| ||||| | |||||||| |
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| T |
22822731 |
ttcccacagatggatcatattagtggtgaattttcttgccacctatgatgatca |
22822784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 22822802 - 22822855
Alignment:
| Q |
251 |
ttcctacatatggatcatattagaggtgaattttcttcccaccaacgatgatca |
304 |
Q |
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|||| |||||||||||||||||| |||| ||||||||||||| |||| ||||| |
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| T |
22822802 |
ttcccacatatggatcatattagtcgtgacttttcttcccaccgacgacgatca |
22822855 |
T |
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