View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3409_high_4 (Length: 328)
Name: NF3409_high_4
Description: NF3409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3409_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 1540241 - 1539915
Alignment:
| Q |
1 |
tggcctcaaagttttcattcattctctgcatttttgtcatctgggccgttgattttcctagtgcttcatcagcacgtgatgctccatcaccctctgctga |
100 |
Q |
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| T |
1540241 |
tggcctcaaagttttcattcattctctccatttttgtcatctgggccgttgattttcctagtgcttcatcagcacgtgatgctccatcaccctctgctga |
1540142 |
T |
|
| Q |
101 |
ttgttcaaccattgttgtcatcatggctgattgtttgtcatttgtttcaaatgacagtaccataaccaaaccatcaggggcatgctgttctggcttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1540141 |
ttgttcaaccattgttgtcatcatggctgattgtttgtcatttgtttcaaatgacagtaccataaccaaaccatcaggggcatgctgttctggcttgaaa |
1540042 |
T |
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| Q |
201 |
actgttctgaaaacatctcctacttgtctttgtgattctctcaaaaacagtgctaatcttggtgttgttttgaatgttacaaaagctgccactcttcctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1540041 |
actgttctgaaaacatctcctacttgtctttgtgattctctcaaaaacagtgctaatcttggtgttgttttgaatgttacaaaagctgccacccttcctg |
1539942 |
T |
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| Q |
301 |
ctgcttgtggtctctctgctcctcctc |
327 |
Q |
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| T |
1539941 |
ctgcttgtggtctctctgctcctcctc |
1539915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 304
Target Start/End: Complemental strand, 29804130 - 29804009
Alignment:
| Q |
183 |
tgctgttctggcttgaaaactgttctgaaaacatctcctacttgtctttgtgattctctcaaaaacagtgctaatcttggtgttgttttgaatgttacaa |
282 |
Q |
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||||||||||| |||||| |||| || ||||| ||||| ||||||| ||||| || |||| | |||||| | |||||||||| ||||||||||| | |
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| T |
29804130 |
tgctgttctggtttgaaatctgtgctcaaaactgctccttcttgtctctgtgaggctttcaagagtagtgctcagtttggtgttgtcttgaatgttacca |
29804031 |
T |
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| Q |
283 |
aagctgccactcttcctgctgc |
304 |
Q |
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||||| | ||||||||||||| |
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| T |
29804030 |
aagctacttctcttcctgctgc |
29804009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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