View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3409_high_5 (Length: 310)
Name: NF3409_high_5
Description: NF3409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3409_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 35256638 - 35256335
Alignment:
| Q |
1 |
gccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctccatgtggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35256638 |
gccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctccatgtggaaa |
35256539 |
T |
|
| Q |
101 |
attttctgcccattgtcctgtatagtaatcaccattggaaagaaccttctcttcggtgtatagttcaaatacctggtttccattttcatcgttatcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35256538 |
attttctgcccattgtcctgtatagtaatcaccattggaaagaaccttctcttcggtgtatagttcaaatacctggtttccattttcatcgttatcatca |
35256439 |
T |
|
| Q |
201 |
tgatggtggctgccttcttcatcgtctgcatttgtaattgctaatgctccaagaccaaatatactattggcacgttttttagctactgcacttgttcttc |
300 |
Q |
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| T |
35256438 |
tggtggtggctgccttcttcatcgtctgcatttgtaattgctaatgctccaagaccaaatatactattggcacgttttttagctactgcacttgttcttc |
35256339 |
T |
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| Q |
301 |
tcac |
304 |
Q |
| |
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|||| |
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| T |
35256338 |
tcac |
35256335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 19643098 - 19643249
Alignment:
| Q |
1 |
gccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctccatgtggaaa |
100 |
Q |
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||||| |||| || || |||||| | ||||||||||||||||||| |||||| || || || ||||| ||||||| || || |||| |||||||| || |
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| T |
19643098 |
gccaagtgaaccttccctttcccatagtttttcctttgaaccattctccaacatatatacatccatctgtccataagtacttccctttcccatgtgggaa |
19643197 |
T |
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| Q |
101 |
attttctgcccattgtcctgtatagtaatcaccattggaaagaaccttctct |
152 |
Q |
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|| || ||||||| |||| |||||||||| ||||||| |||||| ||||| |
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| T |
19643198 |
gttatcagcccattctcctttatagtaatctccattgggtagaaccctctct |
19643249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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