View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3409_low_1 (Length: 439)
Name: NF3409_low_1
Description: NF3409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3409_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 35257287 - 35256867
Alignment:
| Q |
19 |
attctatcacttggtttctcccctccaacacttgcccttccgtcgaccgacattctccgaggtttaccactttcccctcctctagtagacctccaaacag |
118 |
Q |
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| T |
35257287 |
attctatcacttggtttctcccctccaacacttgcccttccgtcgaccgacattctccgaggtttaccactttcccctcctctagtagacctccaaacag |
35257188 |
T |
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| Q |
119 |
caagtctcttttgtgatggcaacaccgaaaccttctcactaggacaaactgaatagccactcaattcactatacaaatcttgaggatcccaattcatata |
218 |
Q |
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| T |
35257187 |
caagtctcttttgtgatggcaacaccgaaaccttctcactaggacaaactgaatagccactcaattcactatacaaatcttgaggatcccaattcatata |
35257088 |
T |
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| Q |
219 |
actttcattagatgattcatcaaatggataaaattttccattttcatctttattattatcatcatcatccttactaaagttcccaacataataacttcca |
318 |
Q |
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| T |
35257087 |
actttcattagatgattcatcaaatggataaaatttcccattttcatctttattattatcatcatcatccttactaaagttcccaacataataacttcca |
35256988 |
T |
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| Q |
319 |
tcttgccatctaaaagtcccatttccttttggcaaaccatcttcccaaatcccttcaaagctattaccattaggccnnnnnnntgaccctttaccccaaa |
418 |
Q |
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| T |
35256987 |
tcttgccatctaaaagttccatttccttttggcaaaccatcttcccaaatcccttcaaagctattaccattaggccaaaaaaatgatcctttaccccaaa |
35256888 |
T |
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| Q |
419 |
ttatcccattcttccattcac |
439 |
Q |
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| T |
35256887 |
ttatcccattcttccattcac |
35256867 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 19642539 - 19642629
Alignment:
| Q |
103 |
gtagacctccaaacagcaagtctcttttgtgatggcaacaccgaaaccttctcactaggacaaactgaatagccactcaattcactataca |
193 |
Q |
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| T |
19642539 |
gtagacctccacactgcaagtctcttctgtgatggcaaaactgaaaccttctccccaggactaacttgatactcactcaactcagtataca |
19642629 |
T |
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