View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_1 (Length: 1168)
Name: NF3410_high_1
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 61 - 654
Target Start/End: Original strand, 41744236 - 41744844
Alignment:
| Q |
61 |
tacacaatagacaccatcatttctcattgtttaccctaaaatagacatcgtcttttctcatcatatgtatttatatatatgtttatgacattactcctta |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| | |
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| T |
41744236 |
tacacaatagacaccatcatttctcattgtttaccctaaaatagacgtcgtcttttctcatcatatgtatttatatatatgtttatgaaattagtcctca |
41744335 |
T |
|
| Q |
161 |
ttactcttgtttacgatcataaaattcttcatcattacccccatcaatacgtttatatcactgccctattctcttcattaatccaattcataaacacgac |
260 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41744336 |
ttactcttgtttatggtcataaaattcttcatcattacccccatcaatacgtttatatcactaccctattctcttcattaatccaattcataaacacgac |
41744435 |
T |
|
| Q |
261 |
tcg------cgtcaacatctctgtactttattttattattcatcttacggtcatactctatcttctagtctactctagactctcaagatactttattcta |
354 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41744436 |
tcgtttctacatcaacatctctgtactttattttattattcatcttacgatcatactctatcttctcgtctactctagactctcaagatactttattcta |
41744535 |
T |
|
| Q |
355 |
atatgatgaaactcatacacataaattcatctttacgagtcnnnnnnnnn---------ataaatagatgaaatgataacatatgttagaaattcataca |
445 |
Q |
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| T |
41744536 |
atatgatgaaactcatacacataaattcatctttacgagtcttttttattttattttatataaatagatgaaatgataacatatgttagaaattcataca |
41744635 |
T |
|
| Q |
446 |
cataagtgcagaagtttgtgtttgaaccctaatcacgatatatgacctaacaacttttatatttttatcagttgatctaagaccgatggatactaataga |
545 |
Q |
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| T |
41744636 |
cataagtgcagaagtttggatttgaaccctaatcacgatatatgacctaacaacttttatatttttatcagttgatctaagatcgatggatactaataga |
41744735 |
T |
|
| Q |
546 |
gttctattgcaacaatgttgtatatataggcacccataaaactatagtgattggatttttcatttcttttgagaattggagagaatttcagcgcgagaaa |
645 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41744736 |
gttctattgcaacaatgttgtgtatataggcacccataaaactatagtgattggatttttaatttcttttgagaattggagagaatttcagcgcgagaaa |
41744835 |
T |
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| Q |
646 |
gtgtgcatg |
654 |
Q |
| |
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||||||||| |
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| T |
41744836 |
gtgtgcatg |
41744844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 724 - 898
Target Start/End: Original strand, 41744914 - 41745088
Alignment:
| Q |
724 |
tatagaatctaaagacgaaattcacacattaaatgtaatgacgtataaattatatattttttcttgaagagggaaattatagttttaaaaccgcacttca |
823 |
Q |
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| T |
41744914 |
tatagaatcaaaagacgaaattcacacattaaatgtaatgacgtataaattatatattttttcttgaagagggaaattatagttttaaaaccgcacttca |
41745013 |
T |
|
| Q |
824 |
gagcatattcaatgtgttgtatgcaagtgaggtatatatttcacattgaatataaaatggatattgaacatttta |
898 |
Q |
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| T |
41745014 |
gagcatattcaatgtgttgtatgcaagtgaggtatatgtttcacatcgaatataaaatggatattgaacatttta |
41745088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 890 - 1146
Target Start/End: Original strand, 41745375 - 41745624
Alignment:
| Q |
890 |
aacattttataaatgagatgactcataaacctattatctttaaaaattttgataaaaatgtgacgtctctctcgcttgtggattatcttttaaactctcc |
989 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||| ||| || || ||||||||||||| || |
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| T |
41745375 |
aacattttataaatgagatgactcataaacctatttt-tttaaaattttggataaaaatgtgatgtctctctcacttatgtataatcttttaaactcccc |
41745473 |
T |
|
| Q |
990 |
tcatgaccagcaaaatatatatgtggttttttcaaatatgagttgtatgtacaagatataatataatttnnnnnnnntgtcagcagaaacatagaaaatt |
1089 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
41745474 |
tcataaccagcaaaatatatatgtggttttttcaaatatgagttgtatgtacaagatataatttaa------aaaaatgtcagcagaaacatagaaaatt |
41745567 |
T |
|
| Q |
1090 |
tattgcagtttggcaactatccatttcttctcattaatttgtatagaatcaatttca |
1146 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
41745568 |
tattgcagtttggcaaccatccatttcttctcattaatttgtacagaatcaatttca |
41745624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 18785090 - 18784973
Alignment:
| Q |
144 |
tatgacattactccttattactcttgtttacgatcataaaattcttcatcattacccccatcaatacgtttatatcactgccctattctcttcattaatc |
243 |
Q |
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| T |
18785090 |
tatgacattacttcttattactcttgtttatagtcaataaattctttattatttcccccatcaagacgtttagattactaccctatcctcttgattaatc |
18784991 |
T |
|
| Q |
244 |
caattcataaacacgact |
261 |
Q |
| |
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|| ||||||||||||||| |
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| T |
18784990 |
catttcataaacacgact |
18784973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 5943878 - 5943822
Alignment:
| Q |
264 |
cgtcaacatctctgtactttattttattattcatcttacggtcatactctatcttct |
320 |
Q |
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|||||||||| || || ||||||||||||||||||||| || |||||||||| |||| |
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| T |
5943878 |
cgtcaacatccctctattttattttattattcatcttatggacatactctattttct |
5943822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 34635625 - 34635574
Alignment:
| Q |
118 |
tcatcatatgtatttatatatatgtttatgacattactccttattactcttg |
169 |
Q |
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| T |
34635625 |
tcatcatatgtatttatatataagtatatgacattacccctcatcactcttg |
34635574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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