View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3410_high_10 (Length: 539)
Name: NF3410_high_10
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 34851914 - 34851473
Alignment:
| Q |
1 |
aaaatcgaaattgtgtaatgaaaatgagtaacaaaggcataatactaatgatagtggccatattttaatatctagtttttaattatgaaaacttttctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851914 |
aaaatcgaaattgtgtaatgaaaatgagtaacaaagacataatactaatgatagtggccattttttaatatctagtttttaattatgaaaacttttctta |
34851815 |
T |
|
| Q |
101 |
gccaaaataaattaaattatggttcctagtcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattctta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851814 |
gccaaaataaattaaattatggttcctagtcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattctta |
34851715 |
T |
|
| Q |
201 |
tctttcttgaactgcaaaagtgaataataacaatcatctttctagtggctattttgaatcatattcttaataaaaattataaagtcaactcgtgacataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851714 |
tctttcttgaactgcaaaagtgaataataacaatcatctttctagtggctattttgaatcatattcttaataaaaattataaagtcaactcgtgacataa |
34851615 |
T |
|
| Q |
301 |
tattcttagaatttaatttagttattaagtaagtttcaaacatttcattagatctcatcatttacaagatatttgaatatttttctaggaaggatataat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851614 |
tattcttagaatttaatttagttattaagtaagtttcaaacatttcattagatctcatcatttacaagatatttgaatatttttctaggaaggatataat |
34851515 |
T |
|
| Q |
401 |
aaatttctcaggtacttaaacgagggc-taaaaaggatgaga |
441 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
34851514 |
aaattcctcaggtaattaaacgagggcttaaaaaggatgaga |
34851473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 457 - 531
Target Start/End: Complemental strand, 34851485 - 34851411
Alignment:
| Q |
457 |
aaaaaggatgagaatgatggcactcacaacatggtggggttcagtggtcctttttcttggggaataattttcttg |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34851485 |
aaaaaggatgagaatgatggcactcacaacatggtggggttcagtggtcctgtttcttggggaataattttcttg |
34851411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 3511696 - 3511619
Alignment:
| Q |
337 |
caaacatttcattagatctcatcatttacaagatatttgaatat-ttttctaggaaggatataataaatttctcaggt |
413 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| |||| |||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
3511696 |
caaacatttaattagatctcaccatttataagatgtttgtatatgttttctaggaaggatataataaattcctcaggt |
3511619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 3651160 - 3651239
Alignment:
| Q |
133 |
taccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaac |
212 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||| | ||||||||||||||| ||||||||| |||| ||| |||||||||| |
|
|
| T |
3651160 |
taccttgccaccagtcgcctcttgaagcgctgtttgaattgttaccattgagatcaccattattcgtatatttcttgaac |
3651239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 3512626 - 3512532
Alignment:
| Q |
130 |
tcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaactgcaaaagtgaa |
224 |
Q |
| |
|
|||||||| ||||||||| || |||||||||||| | | |||||||| |||| ||||| ||| || | |||||||||| |||| |||| ||||| |
|
|
| T |
3512626 |
tcctacctagccaccagtctccccttgaagcactgttaggattgttacaattgagatcagcattatccgtatctttcttaaactacaaaggtgaa |
3512532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University