View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_11 (Length: 536)
Name: NF3410_high_11
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 813343 - 813488
Alignment:
| Q |
25 |
ctctgcaacaaaacgaacttagcccatgtcaaagaaagaagaaagaatccacccaccatattcatgaattctaaagctcaaaatttctttacctacatac |
124 |
Q |
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| T |
813343 |
ctctgcaacaaaacgaacttagcccatgtcaaagaaagaagaaagaatccacccaccatattcatgaattctaaagctcaaaatttctttacctacatac |
813442 |
T |
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| Q |
125 |
acgtgacactcaagtaatcaaacccatcatcacataaaattaaaat |
170 |
Q |
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| T |
813443 |
acgtgacactcaagtaatcaaacccatcatcacataaaattaaaat |
813488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 813551 - 813606
Alignment:
| Q |
237 |
tgtaacctccaacctcttctctcttatcactttcctacttttcctctctcaaataa |
292 |
Q |
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| T |
813551 |
tgtaacctccaacctcttctctcttatcactttcctacttttcctctctcaaataa |
813606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 813777 - 813839
Alignment:
| Q |
470 |
gtaacacactcacctcaatctctccgaaacctttattttattttctttctttcattctgtcac |
532 |
Q |
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| T |
813777 |
gtaacacactcacctcaatctctccgaaaccttaattttattttgtttctttcattctgtcac |
813839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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