View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3410_high_15 (Length: 442)
Name: NF3410_high_15
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 7884701 - 7884832
Alignment:
| Q |
23 |
tgaaagtataaggaaagatctcttgaaattaaaatctgttgtaaaataaggtaaaatcgtttccattgaacattatcatttatcaagcaccaacatagct |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7884701 |
tgaaagtataaggaaagatctcttgaaattaaaatctgttgtaaaataaggtaaaatcgtttccattgaacattatcatttatcaagcaccaacacagct |
7884800 |
T |
|
| Q |
123 |
ttgaattgatataatgatattgtttgatgaga |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
7884801 |
ttgaattgatataatgatattgtttgatgaga |
7884832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 346 - 432
Target Start/End: Original strand, 7885150 - 7885236
Alignment:
| Q |
346 |
ttcttttccatctcataatcacatattagattcttcctgctggtgtttccacttccatccctgcacctattcctcaacctttctctg |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7885150 |
ttcttttccatctcataatcacatattagattcttcctgctggtgtttccacttccatccctgcacctattcctcaacctttctctg |
7885236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University